中国美利奴细毛羊BAC文库的三维PCR筛选

Three-dimensional PCR-based Screening Of Chinese Fine Wool Merino Sheep BAC Library

摘要:

本研究利用中国美利奴细毛羊全基因组BAC文库, 构建了可供快速筛选的两级水平的混合池, 一级混合池和二级混合池(Primary pools and secondary pools)。一级混合池基于每一384-well盘而构建, 由盘、行、列三维混合池组成,二级混合池基于整个BAC文库而构建。设计了一种基于PCR技术的快速筛选方法, 先筛选二级混合池, 再根据结果筛选相应的一级混合池。利用此方法只需一步共66个PCR反应即可从BAC文库中7.4万个克隆中筛选出一个阳性克隆,或三步100个以内的PCR反应筛选出多个阳性克隆。以绵羊基因组多态性分子标记BF94-1为引物, 用一步共66个PCR反应成功筛选到一个阳性克隆373D13。

关键词:混合池, 三维筛选, BAC文库, 绵羊

Abstract:

For rapid screening, we constructed two levels pools (primary and secondary pools) of the bacterial artificial chromosome (BAC) library of Chinese fine wool merino sheep. The primary pools were based on the individual 384-well microtiter plate and were prepared with a three-dimensional pooling scheme. Three dimension (plate, row and column) pools were made for each. The secondary pools were based on the entire BAC library. We developed a PCR based strategy to identify positive BACs from sheep BAC library. First, we analyzed secondary pools DNAs, according to the result, we analyzed correlative primary pools. It was one-step screening (66 PCR reactions) that we could screen a single positive clone from 74 000 BACs by our method, or three-step screening (less than 100 PCR reactions) could screen more clones. By one-step screening (66 PCR reactions), we screened successfully a positive clone 373D13 with polymorphism marker BF94-1.

Key words:pools, three-dimensional screening, BAC library, sheep