• Volume 49,Issue 6,2022 Table of Contents
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    • >Marine Microbiology
    • Identification of marine fungus HL-3 with activity against Vibrio parahaemolyticus and separation of its active substances

      2022, 49(6):1999-2008. DOI: 10.13344/j.microbiol.china.210959

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      Abstract:[Background] At present, the prevention and control of aquatic pathogens such as Vibrio parahaemolyticus in aquaculture mainly rely on antibiotics, which are effective in a short term. However, long-term use of antibiotics causes the enhancement of drug resistance in pathogens and other problems. Therefore, it is urgent to explore safe and effective antibiotic alternatives. [Objective] To screen marine microorganisms with anti-V. parahaemolyticus activity, identify the species, optimize the culture conditions, and preliminarily separate the active substances. [Methods] Marine microorganisms were isolated and purified with spread plate method and streak plate method, and the strains with anti-V.parahaemolyticus activity were screened with Oxford cup method. The active strains were identified based on the morphological characteristics and ITS sequences. The medium type and salinity were tested to optimize the culture conditions. The compound was prepared by semi-preparative high performance liquid chromatography, and the structure of the compound was identified based on nuclear magnetic resonance spectroscopy data. [Results] A total of 76 strains were isolated from 11 types of samples, such as conch, little yellow croaker, and prawn, including 26 fungal strains. A fungal strain HL-3 with anti-V.parahaemolyticus activity was screened out and identified as Aspergillus flavus. strains HL-3 produced diverse metabolites and showed strong antibacterial activity in the modified Sabouraud’s medium. It synthesized only one metabolite and demonstrated high antibacterial activity on fungus No. 5 medium. The metabolite was identified as kojic acid, and the minimum inhibitory concentration of kojic acid against V.parahaemolyticus was 4.0 mg/mL. [Conclusion] The experimental results lay a theoretical basis for the further separation and purification of secondary metabolites of strains HL-3 against V.parahaemolyticus with various chromatographic methods.

    • >Environmental Microbiology
    • Exploring the relationship between methane flux and microorganisms in electrochemical anaerobic digestion system by using pH as a disturbance factor

      2022, 49(6):2009-2021. DOI: 10.13344/j.microbiol.china.210920

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      Abstract:[Background] The metabolic pathway of electrochemical anaerobic digestion (EAD) system is dominated by microorganisms with different functions, and the metabolic flux is related to the abundance, activity, and community structure of functional microorganisms. [Objective] To explore the relationship between methane flux and microorganisms in the EAD system. [Methods] We conducted the metabolic flux analysis by using pH as a disturbance factor. [Results] At pH 7.5, the maximum methane flux was 0.398 4±0.029 3, which was 25% and 65% higher than that 0.297 4±0.012 7 in the control group (pH 6.9) and that 0.136 5±0.012 0 in the disturbance group (pH 6.3), respectively. In addition, an average of 33.8%±3.1% of hydrogen (flux) was used to reduce carbon dioxide to produce methane and acetic acid, and an average of 21.0%±2.6% of acetic acid (flux) was converted into methane. The methane flux was positively correlated with the abundance of Mariniphaga, Methanosaeta, and Desulfomicrobium, while negatively correlated with that of Sedimentibacter. [Conclusion] In the EAD system with the coexistence of methane and acid-producing bacteria, a pH value slightly greater than 7.0 is conducive to the production of methane, and changing the pH value of the EAD system can regulate the metabolite flux by altering microbial abundance.

    • Enrichment and agent preparation of Gordonia for denitrifying phosphorus removal

      2022, 49(6):2022-2036. DOI: 10.13344/j.microbiol.china.210934

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      Abstract:[Background] Adding microbial inoculum is an important means to enhance the efficiency of biological treatment, and denitrification is a key step in nitrogen and phosphorus removal from wastewater. However, there are few reports on denitrifying microbial agents. [Objective] To acclimate efficient denitrifying phosphorus accumulating organism (DPAO), make the denitrifying agent, and enhance the agent performance. [Methods] The DPAO was rapidly enriched by two-phase method, and strain NC1-1 with high-efficiency nitrogen and phosphorus removal was screened out and identified. The bacterial powder was prepared with NC1-1 strain, and the effect of the powder on wastewater treatment in A2SBR system was studied. [Results] DPAO was enriched successfully after 36 days. Strain NC1-1 was identified as Gordonia, with the nitrogen and phosphorus removal rates of 89.46% and 91.68%, respectively. The bacterial powder was successfully prepared with the wheat bran-to-corn flour ratio of 85%:15%, NC1-1 inoculum volume of 20 mL, and fermentation broth volume of 20 mL. The removal rates of total phosphorus (TP) and NO3-N in the A2SBR system supplemented with the bacterial powder at a dosage of 10% were 12.06% and 11.52%, respectively, higher than those in the A2SBR system without the bacterial powder. [Conclusion] The adding of NC1-1 enhanced the pollutant removal efficiency of A2SBR system. The research outcome provides a theoretical basis for the further study of DPAO agent.

    • The correlation analyses between bacterial community and the crucial environmental factors in saline-alkali soil of Songnen Plain

      2022, 49(6):2037-2049. DOI: 10.13344/j.microbiol.china.210978

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      Abstract:[Background] The bacteria inhabiting the saline-alkali soil of Songnen Plain have the ability to tolerate double stresses of hyper-saline/alkali environment. [Objective] Analyzing the correlation between bacterial community and the environmental factors in saline-alkali soil of Songnen Plain will offer insights into the role of uncultured bacteria in the biogeochemical cycle and support the targeted culture of functional isolates. [Methods] A total of 21 saline-alkali soil samples were collected from Daqing (Heilongjiang), Songyuan (Jilin) and Baicheng (Jilin). Illumina MiSeq platform was employed to sequence the V4 hypervariable region of bacterial 16S rRNA gene, and the obtained data were analyzed via bioinformatics tools. [Results] The saline-alkali soils of Songnen Plain were of soda (Na2CO3 and NaHCO3), which mainly contained Na+, K+ and HCO3 and had pH 8.47–10.40. The bacterial diversity of DC11 sampled in Saertu district of Daqing was the highest, while that of DC2 collected in Zhaozhou was the lowest. The bacteria in the 21 samples were classified into 845 genera, 423 families of 26 phyla. The dominant phyla (97.8%) wereActinobacteria (47.3%), Proteobacteria (30.3%), Chloroflexi(7.5%), Gemmatimonadetes (7.0%), Bacteroidetes (2.5%), Firmicutes (1.7%) and Acidobacteria (1.5%). At the family level, the 21 samples were clustered into 3 groups through heatmap and principal component analysis. The redundancy analysis indicated that the content of total salt, Na+ and HCO3 as well as pH significantly affected the bacterial community in saline-alkali soil. [Conclusion] This study indicates that the saline-alkali soil of Songnen Plain harbors diverse bacteria, which can guide the development and utilization of the saline/alkali-tolerant bacteria and their genes.

    • >Fundamentals of Microbiology
    • Optimization of leghemoglobin expression conditions in Pichia pastoris

      2022, 49(6):2050-2061. DOI: 10.13344/j.microbiol.china.210944

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      Abstract:[Background] Leghemoglobin (LegH) can endow vegetarian meat products with beef-like reddish-brown color and meat texture, which has been approved by Food and Drug Administration as a colorant for vegetarian meat and has attracted extensive attention in recent years.[Objective] To optimize the expression conditions and increase the yield of LegH in P.pastoris. [Methods] Firstly, single-factor experiments were conducted to study the effects of peptones, peptone concentration, iron salts and hematin concentration on LegH production during the induction stage. Secondly, the three factors that have the greatest impact on LegH production were screened out through the Plackett-Burman design. Thirdly, the variation ranges and the optimum levels of the three factors were determined via the steepest ascent design and the response surface methodology (RSM), respectively. Finally, according to the RSM results, shake flask fermentation and high-density fermentation in a 5-L tank were carried out. [Results] The single-factor experiments demonstrated that with 4% soybean peptone as the main nitrogen source, the methanol concentration of 1.5%, and the hematin concentration of 5 μmol/L, the yield of LegH was higher. The RSM-optimized fermentation conditions were peptone concentration of 51.48 g/L, pH 5.66, and medium volume of 35.84 mL/250 mL. Under the optimized conditions, the yield of LegH in the shake flask was 0.191 mg/mL, close to the predicted value (0.183 mg/mL), and that in the 5-L tank reached 0.384 mg/mL. [Conclusion] Through optimization of the fermentation conditions for P.pastoris, higher yields of LegH were obtained,which had certain prospects for industrialization after further improvement in the tank fermentation.

    • >Microbial Genetics
    • Co-expression of glutamate dehydrogenase and alcohol dehydrogenase for preparation of (R)-2-chloro-1-phenylethanol

      2022, 49(6):2062-2075. DOI: 10.13344/j.microbiol.china.220115

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      Abstract:[Background] Alcohol dehydrogenase AdhS can produce (R)-2-chloro-1-phenylethanol by catalyzing asymmetric reduction. However, due to its insufficient ability to regenerate coenzyme NADH, coenzyme regenerator is needed to assist NADH regeneration. Glutamate dehydrogenase can regenerate coenzyme NAD(P)H with glutamate as substrate, and has the potential of coenzyme regeneration. [Objective] This study aimed to clone and express glutamate dehydrogenase gene gdhA, and construct the co-expression system of glutamate dehydrogenase GdhA and alcohol dehydrogenase AdhS in Escherichia coli, for improving conversion efficiency of (R)-2-chloro-1-phenylethanol preparation by AdhS. [Methods] GdhA was cloned from Bacillus subtilis 168 and expressed in Escherichia coli BL21(DE3) for the analysis of coenzyme regeneration activity. Then it was co-expressed with alcohol dehydrogenase AdhS to optimize the co-expression condition. Finally, the influence of different coenzyme regeneration schemes on conversion efficiency for (R)-2-chloro-1-phenylethanol preparation was studied. [Results] Specific activity of glutamate dehydrogenase GdhA to regenerate NADH was 694 U/g. The conversion efficiency for (R)-2-chloro-1-phenylethanol preparation reached 465 U/L through co-expression of AdhS and GdhA and optimization of expression conditions. By comparison, the conversion efficiency for (R)-2-chloro-1-phenylethanol preparation by AdhS was improved to about 3 times with NADH regeneration assisted by GdhA. [Conclusion] Glutamate dehydrogenase GdhA can be used for highly efficient regeneration of NADH, and through its co-expression with alcohol dehydrogenase AdhS, the conversion efficiency for (R)-2-chloro-1- phenylethanol preparation by AdhS have been enhanced significantly.

    • >Agricultural Microbiology
    • Protoplast regeneration and monokaryotation characteristics of Cyclocybe aegerita

      2022, 49(6):2076-2087. DOI: 10.13344/j.microbiol.china.210738

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      Abstract:[Background] Genetic breeding is the key guaranteeing the sustainable development of the Cyclocybe aegerita industry. The preparation of protoplasts and monokaryons can provide technical support for the genetic breeding of C.aegerita. [Objective] To obtain the regeneration characteristics, monokaryotation characteristics, and mating types of the protoplasts for the cross breeding, fusion breeding, mutagenesis breeding, genetic transformation, and functional gene mining of C.aegerita. [Methods] The mycelia of C.aegeritaAa11 were directly treated with mannitol solution and lysozyme solution to prepare the protoplasts which were then isolated and regenerated. The changes of colony morphology were observed during the hybridization of protoplasts derived from mononuclear mycelia. [Results] When 7 blocks were inoculated for enzymatic hydrolysis at 33–34 ℃ for 60–80 min, the suspension reached a concentration of 107 protoplasts/mL. The protoplasts of C.aegeritacould not form regenerative colonies until 7 days after the coating and showed a regeneration rate of 0.71% and a monokaryotation rate of 41.1% on the regeneration medium. The regenerated dikaryon and monokaryon strains presented a time difference in the formation of colonies. From day 7, all the regenerated colonies in 3 consecutive days were heterokaryonic strains, and mononuclear colonies began to appear successively since day 4. Almost all of the colonies in the following days were mononuclear strains. A total of 290 monokaryons were obtained in this study and classified into two parental mating types A1B1 and A2B2 (A1B1:A2B2 ratio of 138:152). The monokaryons of both mating types showed vigorous white aerial hyphae, and the monokaryon growth of A1B1 was faster than that of A2B2. A dividing line, bending towards the parent colony with a slower expansion rate, appeared in the contact area of the parent colonies, with the mycelia significantly sparser than the surrounding mycelia. [Conclusion] The morphological characteristics of the two monokaryon strains and their hybridization provide a basis for the selection of parents in the cross breeding of C.aegerita.

    • Screening and identification of rice growth-promoting strains and their effects on rice growth

      2022, 49(6):2088-2099. DOI: 10.13344/j.microbiol.china.210925

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      Abstract:[Background] Microorganisms have great potential in promoting rice growth. It is one of the effective ways for reducing the application rate of chemical fertilizers and ensuring safe and efficient rice production to apply rice growth-promoting microorganisms. [Objective] To screen rice growth-promoting microorganisms for the preparation of microbial fertilizers for rice production. [Methods] Strains with high efficiency in fixing nitrogen, solubilizing phosphate and potassium, or producing siderophore and indole acetic acid (IAA) were screened from rice rhizosphere and identified and their effects on seed germination and plant growth of rice were analyzed. [Results] A total of 6 strains (C7-1, L26, C10-19, S11-11, GYM_bt5 and 20-10) with high efficiency in fixing nitrogen, solubilizing organic and inorganic phosphate or potassium, or producing siderophores and IAA, were screened out from the 394 bacterial strains in rice rhizosphere, which were identified as Serratia nematodiphila, Bacillus aryabhattai, Acinetobacter bereziniae, Pseudomonasmonteilii, and Bacillus velezensisbytheir 16S rRNA gene sequences, respectively. The strains, except C10-19, all can significantly promote the seed germination and root development of ‘Jingliangyouhuazhan’. With the help of the 5 strains, the seed germination rate was 25%−43% higher and the root length (14th day of seedling culture) was 18%−42% larger than that of the control, respectively. Particularly, strain C7-1 with the highest level of solubilizing organic phosphate, had the most significant effect on root length, followed by strain 20-10, while strain S11-11 had the most significant effect on the growth and tillering of stems. [Conclusion]StainsC7-1,20-10 andS11-11 significantly promotes rice growth, which can be used for the preparation of rice microbial fertilizers.

    • Production of composite organic acidifier by fermentation of molasses with yogurt microbial consortium

      2022, 49(6):2100-2110. DOI: 10.13344/j.microbiol.china.210926

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      Abstract:[Background] Developing safe, effective, stable, palatable, and environmentally friendly antibiotic-free feed additives is the top priority of China’s animal husbandry. As a feed additive, acidifier stands out from the alternatives of antibiotics. [Objective] This study aims to produce low-cost lactic acid-based composite organic acidifier by fermenting beet molasses with yogurt microbial consortium. [Methods] Eleven microbial consortiums used for the fermentation of yogurt by farmers and herdsmen in Xinjiang were taken as the starting bacteria and enriched with MRS medium. The microbial consortiums with high acid production were selected for beet molasses fermentation. The fermentation time, fermentation conditions, molasses concentration, nitrogen source, and neutralizer were optimized. [Results] The optimized conditions of producing composite organic acidifier by fermenting molasses with yogurt microbial consortium were non-sterilized medium, molasses concentration of 100 g/L, and static fermentation at 37 ℃ for 48 h. Under the optimal conditions, the microbial consortium B2 produced 34.52 g/L lactic acid and 83.42 g/L total acids. When Na2CO3 was added as the neutralizer, B2 produced 73.42 g/L lactic acid and 169.37 g/L total acids. The microbial consortium B5 produced 61.12 g/L lactic acid and 112.50 g/L total acids. When Ca(OH)2 was added as the neutralizer, B5 produced 74.37 g/L lactic acid and 137.26 g/L total acids. The fermentation broth of microbial consortium B2 mainly inhibited Salmonella, Staphylococcus aureus, and Clostridium perfringens, and that of microbial consortium B5 mainly inhibited Clostridium perfringens,Salmonella enterica, S.aureus, Escherichia coli O517 and E.coli STEC. [Conclusion] The raw beet molasses fermented with microbial consortiums enriched from Xinjiang farmhouse yogurt flora can produce lactic acid-based composite liquid acidifiers at low costs.

    • Characterization and antipathogenic activity of Streptomyces europaeiscabiei F5 from the rhizosphere of pigeon pea

      2022, 49(6):2111-2123. DOI: 10.13344/j.microbiol.china.210930

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      Abstract:[Background] Pigeon pea (Cajanuscajan) is a medicinal plant with a variety of pharmacological activities. Considering the limited understanding and research on actinomycetes in the rhizosphere of pigeon pea, it is necessary to study their application and development potential. [Objective] An actinomycete strain with broad-spectrum antagonistic activity against plant pathogens and common pathogens was screened out from the rhizosphere soil of pigeon pea. The taxonomic status, metabolites and possible biosynthetic pathways were identified to provide data support for the development and application of the strain. [Methods] With 7 plant pathogenic fungi and 8 common pathogens as the indicators, plate confrontation method and filter paper diffusion method were used to screen out the actinomycete strain with broad-spectrum antagonistic activity. The selected strain was identified based on morphological characteristics and phylogenetic tree, and the secondary metabolites of the strain were detected by UPLC-Q-Exactive high-resolution mass spectrometry and UPLC-MS/MS. The polyketide synthaseⅠ(PKS-Ⅰ) and non-ribosonmal peptide synthetase (NRPS) genes of the strain were amplified by PCR to clarify the biosynthetic pathways of the antimicrobial substances. [Results]The actinomycete F5 with broad-spectrum antagonistic activity was screened out and identified as Streptomyces europaeiscabiei. The strain was able to produce active metabolites like geldanamycin and emodin. The genes encoding PKS-Ⅰand NRPS were presented in strain F5. [Conclusion] Streptomyces europaeiscabiei F5 from the rhizosphere of pigeon pea is isolated and identified for the first time. It has broad-spectrum antagonistic activity and can produce antimicrobial substances like geldanamycin and emodin, thus demonstrating great application potential in agriculture and medicine and worth of further research.

    • Beta-glucosidase-producing microbial community in response to the carbon catabolite repression during the composting of cattle manure with biochar

      2022, 49(6):2124-2134. DOI: 10.13344/j.microbiol.china.210966

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      Abstract:[Background] High concentration of glucose will cause carbon catabolite repression, and the functional microbial community producing β-glucosidase adapts to such pressure by differentially regulating the expression of glucose-tolerant and non-glucose tolerant β-glucosidases. Adding biochar in compost can change the environment where microorganisms live and affect the composition and function of the microbial community. [Objective] The effects of biochar addition on the structure and function of β-glucosidase-producing microbial community were analyzed under different carbon metabolism pressures. [Methods] Different carbon metabolism pressures were constructed by adding glucose, cellobiose, and β-glucosidase inhibitor into the biochar-cattle manure-maize straw compost. We used the β-glucosidase gene of the GH1 family derived from bacteria as a molecular marker to construct a gene clone library and measured the activities of carboxymethylc ellulase (CMCase) and β-glucosidase. [Results] Actinobacteria, Proteobacteria, and Bacteroidetes were dominant in the functional microbial community. The relative abundance of Proteobacteria was lower in the low-concentration cellobiose group, and that of Bacteroidetes was significantly higher in the groups with the addition of inhibitor. High glucose significantly inhibited CMCase activity while had little effect on β-glucosidase activity, and low cellobiose markedly induced β-glucosidase activity. The β-glucosidase was activated by high glucose in the high-concentration glucose+high-concentration cellobiose group. [Conclusion] The addition of biochar did not significantly affect the response of the functional microbial community involved in cellulose degradation to carbon catabolite repression. Compared with the natural compost, the addition of biochar in the compost increased the sensitivity of β-glucosidase-producing microbial community to the carbon catabolite repression induced by high concentrations of glucose and to the inductive effect of low-concentration cellobiose.

    • >Food Microbiology
    • Antibiofilm effect of Zanthoxylum armatum DC. essential oil against spoilage Bacillus amyloliquefaciens DY1a

      2022, 49(6):2135-2151. DOI: 10.13344/j.microbiol.china.210890

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      Abstract:[Background] Bacillus spp. are major aerobic bacteria associated with the spoilage of soy products. They form biofilms at the air-liquid interface to bring about constant microbial contamination to soy food processing line. [Objective] To examine the activity of Zanthoxylum armatum DC. essential oil (ZA-EO) against the growth and biofilm formation of a spoilage bacterium Bacillus amyloliquefaciens DY1a isolated from soy products. [Methods] Gas chromatography-mass spectrometry (GC-MS) was used for the chemical characterization of ZA-EO. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of ZA-EO against DY1a were determined by the microdilution method. The inhibitory effect on extracellular protease activity and biofilm formation and the eradication of preformed biofilm by ZA-EO were evaluated. Scanning electron microscope coupled with 3D optical microscope was used to observe the surface topography and structure changes of the biofilm treated with ZA-EO. Besides, the content of exopolysaccharide and protein in the extracellular polymeric substance (EPS) were measured. The anti-biofilm mechanism of ZA-EO was explored from swimming and swarming motility, cell adhesion and auto-aggregation, cell surface hydrophobicity, and Zeta potential. [Results] ZA-EO mainly contained linalool (52.37%), D-limonene (21.81%), and sabinene (10.94%). The MIC and MBC of ZA-EO against spoilage B.amyloliquefaciens DY1a were 3.2 µL/mL and 12.8 µL/mL, respectively. Additionally, 3.2 µL/mL ZA-EO inhibited the secretion of extracellular protease and the biofilm formation, and showed the eradication efficiency of 25.79% for the preformed biofilm. Moreover, ZA-EO decreased the thickness and surface roughness of the biofilm as well as the content of exopolysaccharide and protein in EPS. Furthermore, ZA-EO treatment significantly weakened the swimming and swarming motility, inhibited cell adhension and auto-aggregation, enhanced the cell surface hydrophobicity, and reduced the surface charge of DY1a. [Conclusion] ZA-EO had activity against the growth and biofilm formation of B.amyloliquefaciens DY1a and exhibited promising eradication of preformed biofilm. The activity ofZA-EO against the biofilm formation of B.amyloliquefaciens can be attributed to the interruption against cell motility, changing of cell surface characteristics, and inhibition on cell adhension and auto-aggregation during the early stage, as well as the reduction of exopolysaccharide and protein content in EPS.

    • >Veterinary Microbiology
    • Comparison of the reactivity of convalescent sera to different regions of Mycoplasma hyopneumoniae Mhp367 protein

      2022, 49(6):2152-2159. DOI: 10.13344/j.microbiol.china.210879

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      Abstract:[Background] Previous studies in our laboratory have demonstrated that Mycoplasma hyopneumoniae Mhp367 protein is a humoral immunodominant proteinic antigen. However, the reactivity of different regions of Mhp367 to the convalescent sera remains unclear. [Objective] The purpose of this study is to identify the reactivity of different regions of Mhp367 to the convalescent sera. [Methods] Nine DNA fragments of mhp367 were amplified with different primer combinations. The amplified products were respectively ligated into pGEX-6P-1, pGEX-4T-3, or pGEX-5X-3, and the ligation products were transformed into Escherichia coliDH5α competent cells. The constructed plasmids were extracted from the cells and confirmed by digestion with BamHⅠ and XhoⅠ and nucleotide sequencing. The identified plasmids were then transformed into E.coliBL21(DE3) to express target proteins (different fragments of Mhp367) under the induction of IPTG. After ultrasonic disruption of the recombinant bacteria, the protein was purified with glutathione-conjugated agarose beads. The expression of proteins was visualized by SDS-PAGE. ELISA was employed to identify the reactivity between different fragments of Mhp367 protein and convalescent sera. [Results] Nine recombinant strains that could express different fragments of Mhp367 in soluble form were successfully constructed. All of the nine fragments were humoral immunodominant. The region aa 394–524 in Mhp367 had the strongest reactivity with convalescent sera and was a good antigen fragment for vaccine candidates. [Conclusion] This study provides a candidate of genetic engineering subunit vaccines against M.hyopneumoniae.

    • Biological characterization of Rhs effectors of type VI secretion system of Salmonella typhimurium

      2022, 49(6):2160-2173. DOI: 10.13344/j.microbiol.china.210793

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      Abstract:[Background] The type VI secretion system of bacteria acts as a weapon to kill eukaryotic predators or prokaryotic competitors by releasing toxins, known as effectors. Although some effectors have been identified, the functions of most effectors remain unknown. [Objective] To study the role of the effector Rhs encoded by rhs gene in Salmonella typhimurium. [Methods] The rhs-deleted mutants of Salmonella typhimuriumCVCC541 were constructed via Red recombination, including single gene deletion strains CVCC541Δrhs1 and CVCC541Δrhs2 and the double genes deletion strain CVCC541Δrhs1-2. Meanwhile, the corresponding gene complemented strains C-Δrhs1, C-Δrhs2 and C-Δrhs1-2 were constructed. The biochemical characteristics, biofilm formation, antibiotic resistance, competition between bacteria, bactericidal ability of complement in antiserum, dynamic distribution in vivo and the amounts of IL-18 and IL-1β released by host after infection were compared among the wild-type strain, gene-deleted strains and gene-complemented strains. [Results] Rhs did not affect the metabolism, biofilm formation, antibiotic resistance or complement bactericidal ability of Salmonella typhimurium. The competition index (CI) of CVCC541Δrhs1, CVCC541Δrhs2 and CVCC541Δrhs1-2 was 0.85, 0.77 and 0.87, respectively, which indicated slightly weakened virulence. Compared with the wild-type strain, CVCC541Δrhs1, CVCC541Δrhs2 and CVCC541Δrhs1-2 showed decreased number in the liver and spleen of mice (P<0.05). The host secretion of IL-1β and IL-18 was correlated with the Rhs of Salmonella typhimurium(P<0.05). [Conclusion] The Rhs effectors of Salmonella typhimuriumplay a role in the competition between bacteria, the colonization of bacteria in host organs, and the regulation of the secretion of inflammatory cytokines IL-1β and IL-18 in the host.

    • Genetic characterization of goose astrovirus strain JSSQ isolated from Jiangsu province

      2022, 49(6):2174-2182. DOI: 10.13344/j.microbiol.china.210910

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      Abstract:[Background] A severe infectious disease characterized with gout has attacked the goslings in Shandong, Anhui, Jiangsu, and Guangdong provinces in China since 2016. [Objective] To study the genetic characteristics of goose astrovirus (GAstV) causing this disease. [Methods] A strain of GAstV, named JSSQ, was isolated from the liver sample of a gosling suspected to be undergoing gout from a goose farm in Jiangsu province. The virus genes were sequenced for the genetic characterization. [Results] GAstV JSSQ strain stably propagated in LMH cells without obvious cytopathic changes. The strain had a full-length genome of 7 175 nt and shared the similarity of 57.3%–99.1% with other reported reference strains of GAstV. The phylogenetic analysis showed that JSSQ was close related to the reference strain AHAU3 and they were in the same branch. Two recombination events occurred at the sites 807 and 2 818 in GAstV JSSQ genome, originating from GD AHAU2 (major parent) and AHAU4 (minor parent). The antigenic epitope analysis showed that there were several amino acid mutations, such as P64S, A224T, A228S, and Q229P, in ORF2 region, which resulted in changes in antigenic epitope. [Conclusion] The biological characteristics may vary between the GAstVs in different areas, and thus attention should be paid to the prevention and control of such viruses.

    • Effects of sub-inhibitory concentrations of alkaloids from Macleaya cordata on the expression of outer membrane protein and type II toxin-antitoxin systems of ExPEC

      2022, 49(6):2183-2192. DOI: 10.13344/j.microbiol.china.210904

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      Abstract:[Background] Protopine, sanguinarine, and chelerythrine are main components of the new veterinary drugs Boluohui powder and Bopuzongjian powder in China, which have multiple pharmacological effects. [Objective] To preliminarily reveal the influence and mechanisms of the alkaloids from Macleaya cordata on the physiological activities of extraintestinal pathogenic Escherichia coli (ExPEC), we evaluated the effects of sub-inhibitory concentrations of sanguinarine, chelerythrine, and protopine on the expression of outer membrane protein (OMP), their regulatory genes, and type II toxin-antitoxin (T-A) systems of ExPEC. [Methods] We measured the minimum inhibitory concentrations (MICs) of protopine, sanguinarine, chelerythrine, and antibiotics on the ExPEC mutants with the deletion of yafON, hicAB, and prlF-yhaV. We then compared the expression of OMP genes (ompC,ompX,tolC, and ompF), their regulatory genes (acrR,rob,marR,rpoS, andsoxS), and type II T-A systems (yafON,hicAB, and prlF-yhaV) between WT and the tolC-deleted strain (ΔtolC) exposed to 1/2 MIC of protopine, sanguinarine, and chelerythrine. [Results] The sensitivity ofhicAB-and prlF-yhaV-deleted strains to chloramphenicol increased by 2–4 times, and that of hicAB-deleted strain to sanguinarine also increased by 2 times. Chelerythrine at 1/2 MIC significantly up-regulated the expression of ompX and tolC in WT and ΔtolC, while sanguinarine inhibited the expression of tolC in WT. Protopine, sanguinarine, and chelerythrine at 1/2 MIC up-regulated the expression of ompX and ompC while down-regulated that ofompF in ΔtolC. Sanguinarine and chelerythrine at 1/2 MIC significantly promoted the marR expression in WT and ΔtolC. Moreover, sanguinarine improved the expression of rpoS. Protopine at 1/2 MIC significantly lowered the expression of yafN in WT while significantly increased that in ΔtolC. Protopine, sanguinarine, and chelerythrine at 1/2 MIC down-regulated the expression of hicA and hicB in WT while up-regulated that in ΔtolC. They improved the expression of prlF in WT and ΔtolC, while sanguinarine significantly inhibited the expression of yhaV. [Conclusion] Type II T-A systems and OMPs participate in the responses of ExPEC to alkaloids. The integrity of OMPs (such as TolC) affects the role of T-A systems in bacterial responses to stress, the mechanisms of which remain unclear.

    • >Microbial Functional Genomics
    • Pathogenicity and whole genome analysis of a Nocardia seriolae strain isolated from snakehead

      2022, 49(6):2193-2211. DOI: 10.13344/j.microbiol.china.210923

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      Abstract:[Background] The infection of Nocardia seriolae, a typical opportunistic pathogen, has been documented in many kinds of fishes such as Channa argus and Micropterus salmoides, particularly wounded fishes or fishes with decreased immunity. The resulted nocardiosis lasts a long time, causing great loss to the aquaculture. [Objective] This paper aims to clarify the pathogenicity of Nocardia seriolae isolated from hybrid snakehead (C. maculata♀×C. argus), as well as the whole genome and virulence factors information of the pathogen, which is expected to lay a basis for the future research on etiology ofNocardia seriolae, prevention and control of this pathogen, and vaccine development. [Methods] Through challenge test and pathological analysis of target snakehead organs, the virulence and pathogenic characteristics of Nocardia seriolae NK201610020 were elucidated. In addition, based on whole-genome sequencing and comparative genomics analysis, the genomic features and virulence genes information of the strain were clarified. [Results] The result of challenge test showed that the death rates in the five infection groups were up to over 90% except the group of 1.5×103, and the LD50is1.079×103 CFU/mL, which indicating the strong virulence of the strain. Histopathological results revealed serious pathological damages in liver, spleen, and kidney, as well as formation of granulomas. The whole genome of NK201610020 was 8 294 329 bp with GC content of 68.10% and 7 812 coding genes. The genomes of Nocardia seriolae from different hosts and different regions showed little difference (>99.9% similarity). According to the alignment with virulence gene database, 171 coding genes in the genome of NK201610020 might be virulence genes, which were involved in cell wall synthesis, nutrient metabolism, and persistent bacterial infection. [Conclusion] Nocardia seriolae has strong virulence, and conserved genome sequence containing diverse virulence genes. The results lay a basis for further analysis of Nocardia seriolae pathogenic mechanism.

    • >Microbial Breeding
    • Mutagenesis of Bacillus subtilis M-4 strain with high gossypol degradation by atmospheric and room temperature plasma and optimization of fermentation process

      2022, 49(6):2212-2220. DOI: 10.13344/j.microbiol.china.210780

      Abstract (261) HTML (792) PDF 611.18 K (707) Comment (0) Favorites

      Abstract:[Background] Free gossypol in cottonseed meal restricts the application of the meal as a dietary protein resource, and thus the degradation of gossypol has become a research hotspot. We previously found that Bacillus subtilis M-4 can degrade gossypol and it has been used in the industrial detoxification of cottonseed meal. [Objective] To improve the ability of M-4 to degrade gossypol in cottonseed meal and expand the application of cottonseed meal in breeding industry. [Methods] We employed atmospheric and room temperature plasma (ARTP) for mutagenesis of M-4, and preliminarily screened the forward mutants with the index of gossypol degradation rate in liquid medium. Furthermore, according to the degradation rate of gossypol in solid fermentation medium, the free gossypol-degrading ability of the forward mutants was evaluated. In addition, based on gossypol residue and degradation rate of gossypol, the solid fermentation conditions for cottonseed meal were optimized by single-factor experiment and the optimal fermentation parameters were obtained. [Results] A total of 19 forward mutants were screened out and MY-4-17 was identified to be most efficient. In solid medium, the gossypol degradation rate of MY-4-17 reached 97.15%, 2.55% higher than that of M-4. MY-4-17 showed genetic stability after 5 passages. The optimal fermentation conditions for cottonseed meal with MY-4-17 are as follows: 4% corn flour as sugar source, water content in raw material of 45%–50%, MY-4-17 dose at 1.0×1013 CFU/t, and fermentation duration of 13–15 days. Under such conditions, the content of gossypol in cottonseed meal was reduced from 980 mg/kg to 22 mg/kg and the degradation rate was over 97.75%. [Conclusion] The mutant screened by ARTP can effectively degrade the gossypol in cottonseed meal. The result can serve as a reference for the development and production of fermentation agent for cottonseed meal.

    • >Pharmaceutical Microbiology
    • Screening and liquid fermentation condition optimization of a high lovastatin producing Monascus

      2022, 49(6):2221-2232. DOI: 10.13344/j.microbiol.china.210429

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      Abstract:[Background] Lovastatin is a secondary metabolite of Monascus and an important clinically used lipid-lowering drug. Under liquid fermentation conditions, the production of lovastatin from Monascus is low, which is difficult to meet the requirements of industrial production. [Objective] In this study, a Monascus strain with high lovastatin yield was screened, and the production of lovastatin was improved by optimizing liquid fermentation conditions. [Methods] A high lovastatin yielding Monascus strain was selected from red yeast rice, which was identified based on morphological characteristics, physiological and biochemical characteristics, and 18S rRNA gene sequence analysis, response surface methodology (RSM) was applied for the optimization of the liquid fermentation conditions for lovastatin production. [Results] A lovastatin-producing fungus (Monascus purpureus M4) was obtained. With glycerol at 57.80 g/L, yeast extract powder at 5.52 g/L, and inoculation size at 6.90%, the lovastatin output (173.60 mg/L) was 4.8 times higher than that before optimization. [Conclusion] The establishment of the optimal liquid fermentation conditions for lovastatin production by strain M4 provided technical support for the large-scale production of lovastatin and the industrial application of the strain.

    • Screening and fermentation optimization of a highly pathogenic Beauveria bassiana strain infecting silkworm larvae

      2022, 49(6):2233-2244. DOI: 10.13344/j.microbiol.china.210958

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      Abstract:[Background] Beauveria bassiana, a major entomopathogenic fungus, infects silkworm larvae, producing the white muscardine silkworm Bombyx Batryticatus. The bioactive substances in Bombyx Batryticatus are widely used in medical, healthcare, and cosmetic industries. [Objective] In order to provide high-quality strain resources for the preparation of Bombyx Batryticatus, a highly pathogenic B.bassiana strain was screened from 7 B. bassiana strains from different samples of Bombyx Batryticatus, and the fermentation conditions of this strain were optimized. [Methods] We isolated 7 B. bassiana strains (SDJC-1, SDJC-2, SDJC-3, GXHC-1, SDND-BB, AT-3006 and SQJC-1) from different samples of Bombyx Batryticatus. Based on the results of biological characteristics, protease and chitinase activities, and the lethality in silkworm, a strain with high pathogenicity and excellent traits was screened out. Moreover, the fermentation conditions of this strain were optimized. [Results] The strain SDJC-3 had excellent biological characteristics, high sporulation, and the lethal rate of 75% to silkworm. The Bombyx Batryticatus prepared with SDJC-3 was large and plump and had clear ring of silk gland in the cross-section, exhibiting good quality. The optimum fermentation conditions of SDJC-3 were 27 ℃ of the temperature, 180 r/min of the rotational speed, and 1/5 of the broth volume ratio (250 mL culture flask). [Conclusion] The findings of this study provide a theoretical basis for the use of B.bassiana to prepare and improve the yield and quality of Bombyx Batryticatus.

    • Antibacterial and antioxidant properties of tellurium nanoparticles synthesized by Mariannaea sp. HJ

      2022, 49(6):2245-2255. DOI: 10.13344/j.microbiol.china.210981

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      Abstract:[Background] In recent years, tellurium nanoparticles (TeNPs) have been widely used in optoelectronics, energy, medicine, and other fields. Featuring mild synthesis conditions and low toxicity, biosynthetic TeNPs have attracted wide attention. However, there are few studies on the synthesis of TeNPs by fungi. [Objective] To investigate the ability of Mariannaea sp. HJ to synthesize TeNPs and the antibacterial and antioxidant properties of the TeNPs. [Methods] We used HJ to synthesize TeNPs and optimize the synthesis conditions. XRD, SEM, and DLS were employed to characterize the yielded TeNPs. In addition, we tested the antibacterial and antioxidant properties of TeNPs through experiments. [Results] The optimal synthesis conditions are as follows: 1.5 g (wet weight) of HJ, and TeO32− at 5 mmol/L. The yielded TeNPs were mainly spherical with a hexagonal crystal system (XRD). FTIR showed that functional groups such as hydroxyl, carboxyl, and amino were involved in the synthesis of TeNPs. The TeNPs inhibited Staphylococcus aureus and DPPH (inhibition rate=80%at 500 mg/L). [Conclusion] This study provides a TeNPs-synthesizing fungal strain, which lays a theoretical basis for the biosynthesis and application of TeNPs.

    • >Medical Microbiology
    • Identification of the function and immunogenicity of virus-like particles of GII.4 Sydney 2012[P31] norovirus GZ2013-L10 strain in Guangzhou

      2022, 49(6):2256-2265. DOI: 10.13344/j.microbiol.china.210900

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      Abstract:[Background] Norovirus (NoV) is one of the main causes of global acute gastroenteritis. Among the viruses, GII.4 genotype persists through continuous mutation and is responsible for the majority of NoV infections. Particularly, since the emergence in 2012, GII.4 Sydney 2012[P31] variant has been prevalent all over the word. [Objective] To prepare virus-like particle (VLP) of GII.4 Sydney 2012[P31] NoV strain GZ2013-L10 in Guangzhou and systematically characterize its function and immunogenicity. [Methods] The ORF2 gene of GZ2013-L10 was amplified and cloned to construct the recombinant transposon vector pFastBac1-L10-ORF2. The vector was further transformed into Escherichia coli DH10Bac to develop the recombinant baculovirus plasmid, which was then transfected into insect cells sf9 for the expression of VLPs. The yielded VLPs were purified by ultracentrifugation. Finally, transmission electron microscopy, Western blotting, and receptor binding experiment were performed to characterize the VLPs. In addition, indirect enzyme-linked immunosorbent assay (ELISA) and test of the blocking of receptor binding were carried out verify the virus antiserum of the immunized mice. [Results] We successfully constructed the recombinant baculovirus plasmid Bacmid-L10-ORF2 and obtained VLPs. Electron microscopy demonstrated that the VLPs were about 30 nm in diameter. SDS-PAGE and Western blotting showed that the proteins were 58 kDa. Salivary receptor experiment results showed that the VLPs of GZ2013-L10 can bind to secretory salivary receptors such as A/B/O and porcine gastric mucosa protein (PGM) rather than non-secretory salivary receptors. Antiserum with a titer of 1.3×105 was detected in the immunized mice. However, ELISA results showed no cross-immunoreactivity with capsid proteins of different NoV genotypes. In addition, the antiserum blocked the receptor binding of VLP of the same genotype but had no neutralizing effect on VLP of a different genotype (such as GII.8, GII.17, and GII.3). [Conclusion] VLP of GZ2013-L10 in Guangzhou and its antiserum were prepared and systematically characterized. The result can serve as a reference for elucidating the cause of the epidemic and developing vaccines.

    • >REVIEWS
    • Isolation and culture of methanogenic and methanotrophic archaea:a review

      2022, 49(6):2266-2280. DOI: 10.13344/j.microbiol.china.210895

      Abstract (310) HTML (1902) PDF 1.10 M (913) Comment (0) Favorites

      Abstract:Climate warming is a global challenge, and the main culprit is the continuous emission of greenhouse gases. Methane (CH4), the second most abundant greenhouse gas, accounts for 20% of global warming effects. However, it is difficult to culture methanogens and anaerobic methanotrophic archaea (ANME), which play an important role in methane metabolism, thus hindering the research on methane metabolism, the influence on related carbon resource-sink relationships, and the mechanism. This paper reviewed the enrichment, culture and isolation methods of methanogens and ANME, including enrichment culture, in-situ culture, co-culture, microfluidic technologies, dilution-extinction and solid separation technologies, ANME reactor and flask enrichment culture, metagenomic prediction, and reverse genomics. Then we evaluated these methods and put forward suggestions for the future enrichment, isolation, and culture of methane-metabolizing archaea.

    • Effect of bio-heat on microbial succession and metabolism in traditional solid-state fermentation:a review

      2022, 49(6):2281-2294. DOI: 10.13344/j.microbiol.china.210924

      Abstract (480) HTML (887) PDF 4.76 M (2090) Comment (0) Favorites

      Abstract:Revealing the influence of bio-heat generated in traditional solid-state fermentation on the microbial metabolism is the key to understanding the fermentation mechanism, regulating the fermentation process, and ensuring the fermentation efficiency. In the solid-state fermentation process, the bio-heat generated from the microbial metabolic activities and the low heat transfer efficiency of the fermentation substrate causes the increase in fermentation temperature, which affects the growth and metabolism of microorganisms. However, the effect of bio-heat on the microorganisms in traditional solid-state fermentation and the adaptation mechanism of microorganisms remain unclear. We expounded the effect of high temperature mediated by continuous bio-heat on the microbial succession and metabolism in the traditional solid-state fermentation process. Furthermore, we proposed that the complex community regulate microbial metabolism at multiple levels (community level and individual level) to adapt to the high-temperature environment. Understanding the impact of bio-heat on the microorganisms in traditional solid-state fermentation and the potential heat-resistance mechanisms will facilitate the targeted regulation of fermentation process and improve the production of high-temperature fermentation to meet the needs of industrialization.

    • Research progress on the microbial flora affecting flavor formation of traditional fermented meat products

      2022, 49(6):2295-2307. DOI: 10.13344/j.microbiol.china.210563

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      Abstract:The traditional fermented meat products in China are rich in types and unique in flavor. This article mainly introduces the microorganisms involved in the fermentation of meat products. From the perspective of protein, lipid, and carbohydrate metabolic pathways, we elaborate the mechanisms of microorganisms in synthesizing the flavor substances in fermented meat products and the relationship between microbial succession and flavor changes during fermentation.

    • Research progress of the next-generation probiotics Akkermansia muciniphila

      2022, 49(6):2308-2324. DOI: 10.13344/j.microbiol.china.210912

      Abstract (793) HTML (2132) PDF 2.00 M (1394) Comment (0) Favorites

      Abstract:Akkermansia muciniphila, the next generation of probiotics with significant development potential, is widely considered to be a new candidate for alleviating diseases such as inflammatory bowel disease, irritable bowel syndrome, diabetes, obesity, and amyotrophic lateral sclerosis. With the increasing attention to intestinal bacteria and the advancement of omics technologies in recent years, A.muciniphila has rapidly become a hot spot in the research on probiotics. However, at present, the latest research progress of A.muciniphila remains to be summarized. Therefore, this paper summarizes the research achievements of A.muciniphila in the recent decade from the perspectives of the regulatory effect of A.muciniphila on host health, the isolation, identification, and culture of A.muciniphila, the challenges, opportunities, and prospects of research on A.muciniphila, aiming to provide reference for the further research and development of A.muciniphila.

    • Interaction between polysaccharide and intestinal flora and its structure-effect relationship:a review

      2022, 49(6):2325-2346. DOI: 10.13344/j.microbiol.china.210953

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      Abstract:Intestinal flora is a complex ecosystem which affects many aspects of human physiology, such as diet, disease development, drug metabolism, and immune system regulation. Ubiquitous in animals, plants, and microorganisms, polysaccharides have a variety of physiological activities. Intestinal flora interacts with polysaccharides and digests indigestible polysaccharides. Polysaccharides, which are an important energy source of intestinal flora, promote the proliferation of probiotics. Disorder of intestinal flora leads to the occurrence of diseases, and polysaccharides can alleviate the diseases by regulating intestinal flora. With the launch of Human Microbiome Project and the in-depth research on intestinal flora in China and abroad, relationship between polysaccharides and intestinal flora has been gradually elucidated. However, the relationship between intestinal flora and polysaccharide structure needs to be further explored. Therefore, this article summarized the interaction between polysaccharides and intestinal flora and the alleviation of diseases through regulating intestinal flora structure, and discussed the structure-activity relationship between polysaccharides and intestinal flora from the following aspects: molecular weight of polysaccharides, glycosidic bond, and monosaccharide composition. Moreover, we summed up the future research directions, hoping to provide a reference for further research on disease treatment.

    • Clinical application and development of anti-complement agents:a review

      2022, 49(6):2347-2361. DOI: 10.13344/j.microbiol.china.210961

      Abstract (367) HTML (1477) PDF 630.95 K (1361) Comment (0) Favorites

      Abstract:Complement system is a major component of innate immune system, which provides a vital first-line barrier to invading pathogens. The dysfunction of human complement system is related to multiple diseases, such as rheumatoid arthritis, autoimmune hemolytic anemia, and COVID-19. At the moment, most of the clinical complement inhibitors are chemically synthesized, which show poor selectivity and result in decreased immunity after long-term use. In contrast, natural anti-complement agents feature low toxicity and ease of being absorbed. Particularly, anti-complement agents of microbial origin have unique advantages and application potential, which can be discovered and identified by genome mining and produced in large quantities after metabolic engineering and fermentation optimization. However, related research is still in its infancy. Here we summarized the clinical applications of common complement inhibitors in recent years and reviewed the research and development of anti-complement agents of microbial origin, hoping to provide a reference for the clinical research on complement inhibitors and development of natural anti-complement agents.

    • Molecular biological methods for improving the production of 1,3-propanediol by Klebsiella pneumonia:a review

      2022, 49(6):2362-2377. DOI: 10.13344/j.microbiol.china.210975

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      Abstract:1,3-propanediol (1,3-PD) can be used for chemical synthesis of a variety of compounds, including polyesters, polyethers and polyurethanes. Fermentation has great potential to improve 1,3-PD production. This study summarized the enzymes in the anaerobic metabolic pathways of Klebsiella pneumoniae and the catalysis, and reviewed the molecular modification of key enzymes in 1,3-PD production of K.pneumoniae, construction of genetically engineered strains and the expression of key enzyme genes, and knockout of by-product-related metabolic enzyme genes. Moreover, we also described the development prospects of 1,3-PD.

    • >EDUCATION
    • The exploration and practice of trinity education concept in the teaching of Microbiology experiment

      2022, 49(6):2378-2387. DOI: 10.13344/j.microbiol.china.220359

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      Abstract:Microbiology experiment is the basic course and a core practice course of bioengineering, pharmaceutical engineering, food science and engineering, synthetic biology and other majors. According to the trinity education concept of value shaping, knowledge imparting, and ability training, we set the teaching objectives of microbiology experiment and developed the teaching content system involving value, knowledge, and ability. Further, we improved the teaching contents and methods to keep up with the times, integrated online and offline teaching, standardized the experimental methods, and fused science with education to foster students’ innovative thinking and enthusiasm for research. Additionally, we improved the evaluation system by establishing a comprehensive assessment scheme covering knowledge, ability, and value, and created a microbiology laboratory culture with professional characteristics. The trinity teaching mode of microbiology experiment has been initially established to serve the training of all-round high-quality talents.

    • >PERSPECTIVES AND COMMENTS
    • Research trend of permafrost microorganisms based on bibliometrics

      2022, 49(6):2388-2402. DOI: 10.13344/j.microbiol.china.210940

      Abstract (287) HTML (861) PDF 1000.57 K (767) Comment (0) Favorites

      Abstract:[Background] The thawing of permafrost caused by global warming accelerates the degradation of soil organic carbon by microorganisms, and the generated greenhouse gases will exacerbate the greenhouse effect to some extent, forming a positive feedback effect on global climate change. [Objective] To compare the research hotspots and trends of permafrost microorganisms at home and abroad, and thus provide a basis for the research and development of this field in the future. [Methods] The relevant literature was searched from Web of Science Core Collection and CNKI. BIBExcel was employed to generate the co-word matrix of high-frequency keywords, and the network of high-frequency words was visualized with UCINET and NetDraw. The clustering analysis of high-frequency words was performed in SPSS. [Results] A total of 839 papers related to permafrost microorganisms were retrieved, including 713 in English and 126 in Chinese. The number of papers published in English and its growth rate were significantly higher than those in Chinese. According to the high-frequency keywords and co-occurrence networks, foreign research focused on the relationship between climate change, greenhouse gases, and microbial community changes, while the Chinese on microbial diversity in permafrost areas. The clustering analysis demonstrated that the papers published in English mainly involved the degradation of organic carbon by microorganisms and its impact on permafrost areas and even the world. In addition, the Martian life with permafrost microorganisms as the research object has been explored. The studies published in Chinese mainly concerned microbial diversity, methane emissions, and microbial degradation of pollutants in permafrost. [Conclusion] The research situation of permafrost microorganisms has both similarities and differences at home and abroad. Although other countries have better research systems and knowledge structures than China, the greenhouse gas emissions of permafrost microorganisms caused by warming have become a common research hotspot at home and abroad.

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