Two-step fermentation of vitamin C with mixed bacteria based on omics: a review
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    Abstract:

    Two-step fermentation is the main method for the industrial production of vitamin C (Vc). The mechanism for the production of Vc precursor 2-keto-l-gluonic acid (2-KLG) in the second step with mixed bacteria composed of companion strain and 2-KLG-producing Ketogulonigenium vulgare has been a research focus. It has become a common method to reveal the interactions of various components in biological systems through high-throughput genomics, transcriptomics, proteomics, metabolomics and other omics. In this paper, we summarized the research on the use of omics in elucidating the interactions between two bacteria in fermentation of Vc, the relief of oxidative stress, companion active substances, quorum sensing in K. vulgare, exogenous additives, and genetic modification of K. vulgare to promote 2-KLG production, providing ideas for further exploration and research.

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    [1] GROSSO G, BEI R, MISTRETTA A, MARVENTANO S, CALABRESE G, MASUELLI L, GIGANTI MG, MODESTI A, GALVANO F, GAZZOLO D. Effects of vitamin C on health:a review of evidence[J]. Frontiers in Bioscience:Landmark Edition, 2013, 18(3):1017-1029.
    [2] 邹伟, 刘杰, 刘立明, 陈坚. 基于基因组技术的维生素C生产菌株生理功能解析与应用[J]. 基因组学与应用生物学, 2012, 31(5):513-521. ZOU W, LIU J, LIU LM, CHEN J. Application of genome-based approaches on the vitamin C producing industrial strains:a review[J]. Genomics and Applied Biology, 2012, 31(5):513-521(in Chinese).
    [3] URBANCE JW, BRATINA BJ, STODDARD SF, SCHMIDT TM. Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize l-sorbose to 2-keto-l-gulonic acid[J]. International Journal of Systematic and Evolutionary Microbiology, 2001, 51(Pt 3):1059-1070.
    [4] 杨帆, 贾茜, 熊朝晖, 张笑冰, 吴洪涛, 赵颖, 杨剑, 朱俊萍, 董杰, 薛颖, 孙立连, 沈岩, 金奇. 酮古龙酸菌WB0104的全基因组分析[J]. 科学通报, 2006(8):923-927. YANG F, JIA Q, XIONG CH, ZHANG XB, WU HT, ZHAO Y, YANG J, ZHU JP, DONG J, XUE Y, SUN LL, SHEN Y, JIN Q. Genome analysis of Ketogulonigenium vulgare WB0104[J]. Chinese Science Bulletin, 2006(8):923-927(in Chinese).
    [5] JIA N, DING MZ, DU J, PAN CH, TIAN G, LANG JD, FANG JH, GAO F, YUAN YJ. Insights into mutualism mechanism and versatile metabolism of Ketogulonicigenium vulgare Hbe602 based on comparative genomics and metabolomics studies[J]. Scientific Reports, 2016, 6(1):23068.
    [6] LIU LM, LI Y, ZHANG J, ZHOU ZM, LIU J, LI XM, ZHOU JW, DU GC, WANG L, CHEN J. Complete genome sequence of the industrial strain Ketogulonicigenium vulgare WSH-001[J]. Journal of Bacteriology, 2011, 193(21):6108-6109.
    [7] XIONG XH, HAN S, WANG JH, JIANG ZH, CHEN W, JIA N, WEI HL, CHENG H, YANG YX, ZHU B, YOU S, HE JY, HOU W, CHEN MX, YU CJ, JIAO YH, ZHANG WC. Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25[J]. Journal of Bacteriology, 2011, 193(1):315-316.
    [8] WANG CY, LI Y, GAO ZW, LIU LC, WU YC, ZHANG MY, ZHANG TY, ZHANG YX. Reconstruction and analysis of carbon metabolic pathway of Ketogulonicigenium vulgare SPU B805 by genome and transcriptome[J]. Scientific Reports, 2018, 8:17838.
    [9] JIA N, DING MZ, DU YZ, FENG S, GAO F, YUAN YJ. Complete genome sequence of the industrial bacterium Ketogulonicigenium vulgare SKV[J]. Genome Announcements, 2016, 4(6):e01426-e01416.
    [10] WANG CY, LI Y, GAO ZW, LIU LC, ZHANG MY, ZHANG TY, WU CF, ZHANG YX. Establishing an innovative carbohydrate metabolic pathway for efficient production of 2-keto-l-gulonic acid in Ketogulonicigenium robustum initiated by intronic promoters[J]. Microbial Cell Factories, 2018, 17(1):81.
    [11] LIU L, LI Y, ZHANG J, ZOU W, ZHOU Z, LIU J, LI X, WANG L, CHEN J. Complete genome sequence of the industrial strain Bacillus megaterium WSH-002[J]. Journal of Bacteriology, 2011, 193(22):6389-6390.
    [12] JIA N, DING MZ, GAO F, YUAN YJ. Comparative genomics analysis of the companion mechanisms of Bacillus thuringiensis Bc601 and Bacillus endophyticus Hbe603 in bacterial consortium[J]. Scientific Reports, 2016, 6:28794.
    [13] EPPINGER M, BUNK B, JOHNS MA, EDIRISINGHE JN, KUTUMBAKA KK, KOENIG SSK, CREASY HH, ROSOVITZ MJ, RILEY DR, DAUGHERTY S, MARTIN M, ELBOURNE LDH, PAULSEN I, BIEDENDIECK R, BRAUN C, GRAYBURN S, DHINGRA S, LUKYANCHUK V, BALL B, UL-QAMAR R, et al. Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319[J]. Journal of Bacteriology, 2011, 193(16):4199-4213.
    [14] LIU LM, CHEN KJ, ZHANG J, LIU J, CHEN J. Gelatin enhances 2-keto-l-gulonic acid production based on Ketogulonigenium vulgare genome annotation[J]. Journal of Biotechnology, 2011, 156(3):182-187.
    [15] JIA N, DU J, DING MZ, GAO F, YUAN YJ. Genome Sequence of Bacillus endophyticus and analysis of its companion mechanism in the Ketogulonigenium vulgare-Bacillus strain consortium[J]. PLoS One, 2015, 10(8):e0135104.
    [16] 朱益波. 巨大芽孢杆菌与普通生酮基古龙酸菌互生作用研究[D]. 无锡:江南大学博士学位论文, 2012. ZHU YB. Mechanisms in the mutualism between Bacillus megaterium and Ketogulonigenium vulgare[D]. Wuxi:Doctoral Dissertation of Jiangnan University, 2012(in Chinese).
    [17] 张静. 基于生化策略与组学技术的维生素C生产菌株间生理关系解析[D]. 无锡:江南大学博士学位论文, 2010. ZHANG J. Analysis of physiological relationship between vitamin C producing stains based on biochemical strategy and omics techniques[D]. Wuxi:Doctoral Dissertation of Jiangnan University, 2010(in Chinese).
    [18] MA Q, BI YH, WANG EX, ZHAI BB, DONG XT, QIAO B, DING MZ, YUAN YJ. Integrated proteomic and metabolomic analysis of a reconstructed three-species microbial consortium for one-step fermentation of 2-keto-l-gulonic acid, the precursor of vitamin C[J]. Journal of Industrial Microbiology & Biotechnology, 2019, 46(1):21-31.
    [19] MA Q, ZHOU J, ZHANG WW, MENG XX, SUN JW, YUAN YJ. Integrated proteomic and metabolomic analysis of an artificial microbial community for two-step production of vitamin C[J]. PLoS One, 2011, 6(10):e26108.
    [20] ZHU YB, LIU J, DU GC, ZHOU JW, Chen J. Sporulation and spore stability of Bacillus megaterium enhance Ketogulonigenium vulgare propagation and 2-keto-l-gulonic acid biosynthesis[J]. Bioresource Technology, 2012, 107:399-404.
    [21] HUANG Z, ZOU W, LIU J, LIU LM. Glutathione enhances 2-keto-l-gulonic acid production based on Ketogulonicigenium vulgare model iWZ663[J]. Journal of Biotechnology, 2013, 164(4):454-460.
    [22] YE C, ZOU W, XU N, LIU LM. Metabolic model reconstruction and analysis of an artificial microbial ecosystem for vitamin C production[J]. Journal of Biotechnology, 2014, 182/183:61-67.
    [23] 贾楠. 比较基因组及代谢组对酮古龙酸杆菌及其伴生菌的解析[D]. 天津:天津大学硕士学位论文, 2016. JIA N. Comparative genomics and metabolomics analysis of Ketogulonigenium vulgare and companion Bacillus strain[D]. Tianjin:Master's Thesis of Tianjin University, 2016(in Chinese).
    [24] ZHOU J, MA Q, YI H, WANG LL, SONG H, YUAN YJ. Metabolome profiling reveals metabolic cooperation between Bacillus megaterium and Ketogulonicigenium vulgare during induced swarm motility[J]. Applied and Environmental Microbiology, 2011, 77(19):7023-7030.
    [25] DING MZ, ZOU Y, SONG H, YUAN YJ. Metabolomic analysis of cooperative adaptation between co-cultured Bacillus cereus and Ketogulonicigenium vulgare[J]. PLoS One, 2014, 9(4):e94889.
    [26] 麻浩, 李野, 张磊, 张海宏, 蔺新峰, 周凯, 易绍琼, 李冠霖, 陈薇, 张怡轩. 混菌发酵中与普通生酮基古龙酸菌产2-酮基-l-古龙酸相关功能蛋白的研究[J]. 生物技术通讯, 2012, 23(5):658-661. MA H, LI Y, ZHANG L, ZHANG HH, LIN XF, ZHOU K, YI SQ, LI GL, CHEN W, ZHANG YX. Research of the proteins relevant to 2-keto-l-gulonic acid pro duced during the mix culture fermentation[J]. Letters in Biotechnology, 2012, 23(5):658-661(in Chinese).
    [27] HALLIWELL B. Reactive species and antioxidants. Redox biology is a fundamental theme of aerobic life[J]. Plant Physiology, 2006, 141(2):312-322.
    [28] SCHIEBER M, CHANDEL NS. ROS function in redox signaling and oxidative stress[J]. Current Biology, 2014, 24(10):R453-R462.
    [29] 杨宇. 维生素C二步发酵中两株不同伴生菌作用机制研究[D]. 沈阳:沈阳农业大学博士学位论文, 2015. YANG Y. Study on mechanism of different companion strains in vitamin C two-step fermentation[D]. Shenyang:Doctoral Dissertation of Shenyang Agricultural University, 2015(in Chinese).
    [30] 吕淑霞, 廖林, 张云鹤. Vc混菌发酵中伴生菌解除产酸菌氧化胁迫的研究进展[J]. 沈阳农业大学学报, 2017, 48(6):641-646. LÜ SX, LIAO L, ZHANG YH. Research progress on the oxidative stress relieving of acid-producing strain by companion strain in vitamin C mixed cultures fermentation[J]. Journal of Shenyang Agricultural University, 2017, 48(6):641-646(in Chinese).
    [31] ZHANG YH, LIN JY, BAI L, HUANG M, CHEN HQ, YAO S, LÜ SX. Antioxidant capacities of Bacillus endophyticus ST-1 and Ketogulonicigenium vulgare 25B-1 in vitamin C fermentation[J]. Biotechnology & Biotechnological Equipment, 2018, 32(3):628-637.
    [32] HUANG M, ZHANG YH, YAO S, MA D, YU XD, ZHANG Q, LÜ SX. Antioxidant effect of glutathione on promoting 2-keto-l-gulonic acid production in vitamin C fermentation system[J]. Journal of Applied Microbiology, 2018, 125(5):1383-1395.
    [33] 冯树, 孙传宝, 张忠泽, 朱可丽, 张海宏, 高永涛. 维生素C二步发酵中巨大芽孢杆菌对氧化葡萄糖酸杆菌生长和产酸的影响[J]. 微生物学杂志, 1998, 18(1):6-9. FENG S, SUN CB, ZHANG ZZ, ZHU KL, ZHANG HH, GAO YT. Effects of Bacillus megaterium on growth and acid production of Gluconobacter oxydans in two-step vitamin C fermentation process[J]. Journal of Microbiology, 1998, 18(1):6-9(in Chinese).
    [34] 冯树, 张舟, 张成刚, 张忠泽. 混合培养中巨大芽孢杆菌对氧化葡萄糖酸杆菌的作用[J]. 应用生态学报, 2000, 11(1):119-122. FENG S, ZHANG Z, ZHANG CG, ZHANG ZZ. Effect of Bacillus megaterium on Gluconobacter oxydans in mixed culture[J]. Chinese Journal of Applied Ecology, 2000, 11(1):119-122(in Chinese).
    [35] 吕淑霞, 牛建双, 马镝, 张良, 陈宏权, 张忠泽. VC混菌发酵中大菌不同胞外组分对小菌的影响[J]. 食品与生物技术学报, 2011, 30(5):700-704. LÜ SX, NIU JS, MA D, ZHANG L, CHEN HQ, ZHANG ZZ. Effect of different components of Bacillus megaterium on Gluconobacter oxydansin mix-cultured of vitamin C fermentation[J]. Journal of Food Science and Biotechnology, 2011, 30(5):700-704(in Chinese).
    [36] 宫晓丽, 郭智勇, 吕淑霞, 于晓丹, 马镝, 张良, 张忠泽, 陈宏权. 巨大芽孢杆菌B. m 2980产孢对氧化葡萄糖酸杆菌产酸的影响[J]. 工业微生物, 2013, 43(6):49-53. GONG XL, GUO ZY, LÜ SX, YU XD, MA D, ZHANG L, ZHANG ZZ, CHEN HQ. Effects of Bacillus megaterium 2980's spore formation on 2 KGA production of Gluconobacter oxydans[J]. Industrial Microbiology, 2013, 43(6):49-53(in Chinese).
    [37] 国陶红, 宋馨宇, 陈磊, 张卫文. 人工微生物混菌系统机制解析中的组学应用及进展[J]. 生物工程学报, 2022, 38(2):460-477. GUO TH, SONG XY, CHEN L, ZHANG WW. Using OMICS technologies to analyze the mechanisms of synthetic microbial co-culture systems:a review[J]. Chinese Journal of Biotechnology, 2022, 38(2):460-477(in Chinese).
    [38] 常晶, 史国萃, 曾名湧, 刘尊英. 细菌群体感应淬灭酶及其应用研究进展[J]. 生物加工过程, 2019, 17(3):244-250. CHANG J, SHI GC, ZENG MY, LIU ZY. Quorum quenching enzymes-a review[J]. Chinese Journal of Bioprocess Engineering, 2019, 17(3):244-250(in Chinese).
    [39] DONG YH, XU JL, LI XZ, ZHANG LH. AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora[J]. Proceedings of the National Academy of Sciences of the United States of America, 2000, 97(7):3526-3531.
    [40] SCHNEIDER J, YEPES A, GARCIA-BETANCUR JC, WESTEDT I, MIELICH B, LÓPEZ D. Streptomycin- induced expression in Bacillus subtilis of YtnP, a lactonase-homologous protein that inhibits development and streptomycin production in Streptomyces griseus[J]. Applied and Environmental Microbiology, 2012, 78(2):599-603.
    [41] 崔天琦, 白凤翎, 励建荣. 基于AHLs介导的革兰氏阴性菌群体感应调控及淬灭机制研究进展[J]. 中国食品学报, 2020, 20(8):308-320. CUI TQ, BAI FL, LI JR. Advance on quorum-sensing regulation and quenching mechanism of Gram-negative bacteria mediated by AHLs[J]. Journal of Chinese Institute of Food Science and Technology, 2020, 20(8):308-320(in Chinese).
    [42] 邱健, 贾振华, 李承光, 马宏, 宋水山, 张霞, 冀营光. 细菌群体感应淬灭酶的研究进展[J]. 微生物学通报, 2006, 33(4):139-143. QIU J, JIA ZH, LI CG, MA H, SONG SS, ZHANG X, JI YG. Advance on bacterial quorum-quenching enzymes[J]. Microbiology, 2006, 33(4):139-143(in Chinese).
    [43] FUQUA C, GREENBERG EP. Listening in on bacteria:acyl-homoserine lactone signalling[J]. Nature Reviews Molecular Cell Biology, 2002, 3(9):685-695.
    [44] CHUN H, CHOI O, GOO E, KIM N, KIM H, KANG Y, KIM J, MOON JS, HWANG I. The quorum sensing-dependent gene katG of Burkholderia glumae is important for protection from visible light[J]. Journal of Bacteriology, 2009, 191(13):4152-4157.
    [45] HASSETT DJ, MA JF, ELKINS JG, MCDERMOTT TR, OCHSNER UA, WEST SE, HUANG CT, FREDERICKS J, BURNETT S, STEWART PS, MCFETERS G, PASSADOR L, IGLEWSKI BH. Quorum sensing in Pseudomonas aeruginosa controls expression of catalase and superoxide dismutase genes and mediates biofilm susceptibility to hydrogen peroxide[J]. Molecular Microbiology, 1999, 34(5):1082-1093.
    [46] GOO E, MAJERCZYK CD, AN JH, CHANDLER JR, SEO YS, HAM H, LIM JY, KIM H, LEE B, JANG MS, GREENBERG EP, HWANG I. Bacterial quorum sensing, cooperativity, and anticipation of stationary-phase stress[J]. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109(48):19775-19780.
    [47] AN JH, GOO E, KIM H, SEO YS, HWANG I. Bacterial quorum sensing and metabolic slowing in a cooperative population[J]. Proceedings of the National Academy of Sciences of the United States of America, 2014, 111(41):14912-14917.
    [48] LING J, ZHOU L, WU GC, ZHAO YC, JIANG TP, LIU FQ. The AHL quorum-sensing system negatively regulates growth and autolysis in Lysobacter brunescens[J]. Frontiers in Microbiology, 2019, 10:2748.
    [49] ZHOU J, YI H, WANG LL, ZHANG WW, YUAN YJ. Metabolomic analysis of the positive effects on Ketogulonigenium vulgare growth and 2-keto-l-gulonic acid production by reduced glutathione[J]. Omics:A Journal of Integrative Biology, 2012, 16(7/8):387-396.
    [50] MA Q, ZHANG WW, ZHANG L, QIAO B, PAN CS, YI H, WANG LL, YUAN YJ. Proteomic analysis of Ketogulonicigenium vulgare under glutathione reveals high demand for thiamin transport and antioxidant protection[J]. PLoS One, 2012, 7(2):e32156.
    [51] 吕淑霞, 赵朔, 马镝, 林英, 张良, 陈宏权, 张忠泽. 几种外源物质对氧化葡萄糖酸杆菌生长及产2-酮基-l-古龙酸的影响[J]. 沈阳农业大学学报, 2011, 42(2):184-189. LÜ SX, ZHAO S, MA D, LIN Y, ZHANG L, CHEN HQ, ZHANG ZZ. Effect of several exogenous substances on growth and 2-keto-l-gulonic acid accumulation of Gluconobacter oxydans[J]. Journal of Shenyang Agricultural University, 2011, 42(2):184-189(in Chinese).
    [52] 樊世存. 维生素C生产菌株生理功能解析与发酵优化[D]. 无锡:江南大学硕士学位论文, 2014. FAN SC. Analysis of physiological characteirstics of vitamin C producing strains and optimization[D]. Wuxi:Master's Thesis of Jiangnan University, 2014(in Chinese).
    [53] 张倩. Vc混菌发酵中短小芽孢杆菌铁载体促产酸作用机制的研究[D]. 沈阳:沈阳农业大学硕士学位论文, 2020. ZHANG Q. Mechanism on the promoting 2-keto-l-gulonic acid production of Ketogulonicigenium vulgare by the siderophores from Bacillus pumilus in Vc co-culture fermentation[D]. Shenyang:Master's Thesis of Shenyang Agricultural University, 2020(in Chinese).
    [54] 张倩, 黄茂, 张玮丹, 李颖, 吕淑霞. 芽孢杆菌促普通生酮基古龙酸菌产酸机制研究进展[J]. 微生物学通报, 2019, 46(12):3469-3474. ZHANG Q, HUANG M, ZHANG WD, LI Y, LÜ SX. Research progress on the companion mechanism in Ketogulonigenium vulgare and Bacillus strain consortium[J]. Microbiology China, 2019, 46(12):3469-3474(in Chinese).
    [55] LÜ SX, GUO Z, PAN J, YANG Y, YANG W, CHEN H, ZHANG Z. Effect of rare earth elements on vitamin C fermentation by mixed cultures[J]. International Journal of Agriculture and Biology, 2014, 16(6):1135-1140.
    [56] CAI L, YUAN MQ, LI ZJ, CHEN JC, CHEN GQ. Genetic engineering of Ketogulonigenium vulgare for enhanced production of 2-keto-l[J]. Journal of Biotechnology, 2012, 157(2):320-325.
    [57] PAN CH, WANG EX, JIA N, DONG XT, LIU Y, DING MZ, YUAN YJ. Reconstruction of amino acid biosynthetic pathways increases the productivity of 2-keto-l-gulonic acid in Ketogulonicigenium vulgare- Bacillus endophyticus consortium via genes screening[J]. Journal of Industrial Microbiology & Biotechnology, 2017, 44(7):1031-1040.
    [58] 王威勋, 李燕, 李野, 张天园, 张怡轩. 山梨糖脱氢酶基因在酮古龙酸菌中的过表达[J]. 沈阳药科大学学报, 2016, 33(10):821-825. WANG WX, LI Y, LI Y, ZHANG TY, ZHANG YX. Clone and overexpression of sorbose dehydrogenase in Ketogulonicigenium vulgare[J]. Journal of Shenyang Pharmaceutical University, 2016, 33(10):821-825(in Chinese).
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ZHANG Bo, ZHANG Qian, GUO Rui, LYU Shuxia. Two-step fermentation of vitamin C with mixed bacteria based on omics: a review[J]. Microbiology China, 2023, 50(5): 2191-2203

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  • Received:August 07,2022
  • Adopted:October 09,2022
  • Online: May 06,2023
  • Published: May 20,2023
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