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基于Web of Science核心合集数据库和CiteSpace中植物内生真菌多样性研究的文献计量学分析
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省部共建云南生物资源保护与利用国家重点实验室开放课题(gzkf2022003);云南省重大科技专项(202202AE090021);云南省高校植物有益内生菌功能发掘与应用科技创新团队建设项目


Bibliometric analysis of plant endophytic fungal diversity research based on Web of Science core collection database and CiteSpace
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    摘要:

    【背景】 内生菌几乎存在于所有目前已研究过的植物中,感染内生真菌的植物宿主往往具有生长快速、抗逆境、抗病害、抗天敌等优势。目前,植物内生菌多样性得到了广泛关注,然而现阶段对该领域进行定量统计、分析的研究报道较少。【目的】 对植物内生真菌多样性领域文献运用计量学方法进行分析,探讨该领域的研究现状及研究热点。【方法】 通过文献计量学方法,基于Web of Science (WOS)核心合集数据库,以“endophytic fungal diversity and plant”为检索词进行主题检索,统计1992–2022年间“植物内生真菌多样性”研究文献的刊文数量、期刊、研究机构、主要作者和关键词的分布情况,并利用CiteSpace软件进行可视化分析。【结果】 通过关键词突现分析发现biodiversity (生物多样性)、symbiosis (共生)、soil (土壤) 3个关键词与该领域文献发表量突增的时段密切相关。并通过关键词聚类分析,得到9个关键词标签,具体3个热点研究方向。【结论】 “Endophytic fungal diversity and plant”研究的英文文献数量从2019年开始快速增加,内生真菌多样性、内生真菌促进宿主生长、内生真菌次生代谢产物药用性为现阶段的研究热点。未来应该加强该领域高影响力作者、机构的合作,针对本领域的3个热点及不足展开深入、系统的研究。

    Abstract:

    [Background] Endophytes exist in almost all plants that have been studied so far, and plant hosts infected with endophytes often experience rapid growth and develop resistance to stress, diseases, and natural enemies. Studies have been conducted regarding the endophyte diversity, while few studies involve quantitative statistics and analysis. [Objective] To study the current research status and hotspots of endophytic fungal diversity by bibliometrics. [Methods] The relevant articles were retrieved from the Web of Science (WOS) Core Collection with the keywords of “endophytic fungal diversity and plant” and the time interval of 1992-2022. The number of articles, journals, research institutions, main authors, and keywords were analyzed and the distribution was visualized by CiteSpace. [Results] The keyword burst analysis showed that biodiversity, symbiosis, and soil were closely related to the period of article surging in this field. The cluster analysis of keywords yielded 9 keyword tags in 3 hot research directions. [Conclusion] The number of articles published in English about endophytic fungal diversity and plant has grown rapidly since 2019. Endophytic fungal diversity, promotion of host growth by endophytic fungi, and medicinal properties of secondary metabolites of endophytic fungi are currently the focuses of research in this field. In the future, high-impact authors and institutions should enhance collaboration and carry out in-depth and systematic research on the three hot spots and shortcomings in this field.

    参考文献
    [1] PETRINI O. Fungal Endophytes of Tree Leaves[M]. Microbial Ecology of Leaves. New York: Springer, 1991: 179-197.
    [2] MATERATSKI P, VARANDA C, CARVALHO T, DIAS AB, CAMPOS MD, REI F, DO ROSÁRIO FÉLIX M. Spatial and temporal variation of fungal endophytic richness and diversity associated to the phyllosphere of olive cultivars[J]. Fungal Biology, 2019, 123(1): 66-76.
    [3] ZHANG LH, LI XH, SONG XH, BIAN CZ, KANG XT, ZHAO JQ, QIAO HX, GONG YZ. Assessment of the endophytic fungal composition of Lactobacillus plantarum and Enterococcus faecalis-fermented Astragalus membranaceus using single-molecule, real-time sequencing technology[J]. Frontiers in Veterinary Science, 2022, 9: 880152.
    [4] ZUO YL, HU QN, ZHANG KX, HE XL. Host and tissue affiliations of culturable endophytic fungi associated with xerophytic plants in the desert region of Northwest China[J]. Agronomy, 2022, 12(3): 727.
    [5] ALY AH, DEBBAB A, KJER J, PROKSCH P. Fungal endophytes from higher plants: a prolific source of phytochemicals and other bioactive natural products[J]. Fungal Diversity, 2010, 41(1): 1-16.
    [6] FONTANA DC, de PAULA S, TORRES AG, de SOUZA VHM, PASCHOLATI SF, SCHMIDT D, NETO DD. Endophytic fungi: biological control and induced resistance to phytopathogens and abiotic stresses[J]. Pathogens, 2021, 10(5): 570.
    [7] NISA H, KAMILI AN, NAWCHOO IA, SHAFI S, SHAMEEM N, BANDH SA. Fungal endophytes as prolific source of phytochemicals and other bioactive natural products: a review[J]. Microbial Pathogenesis, 2015, 82: 50-59.
    [8] FERREIRA-SILVA A, HUGHES FM, ROSA CA, ROSA LH. Higher turnover of endophytic fungal assemblages in the tissues of globose cactus Melocactus ernestii from Brazilian semi-arid biome[J]. Symbiosis, 2021, 85(1): 79-91.
    [9] KENNEDY JP, ANTWIS RE, PREZIOSI RF, ROWNTREE JK. Evidence for the genetic similarity rule at an expanding mangrove range limit[J]. American Journal of Botany, 2021, 108(8): 1331-1342.
    [10] 廖飞, 何洁, 任亚玲, 韩昌权, 钟孟淮, 胡延春. 基于Web of Science数据库的植物内生真菌研究的可视化分析[J]. 微生物学杂志, 2024, 44(3): 86-95. LIAO F, HE J, REN YL, HAN CQ, ZHONG MH, HU YC. Visual analysis of research status and trend of endophytic fungi based on Web of Science database[J]. Journal of Microbiology, 2024, 44(3): 86-95(in Chinese).
    [11] 马勤, 杨继涛, 琚彤军, 李秧秧, 康博文, 同金霞. 基于文献计量的植物WUE研究现状分析[J]. 西北林学院学报, 2022, 37(6): 266-272. MA Q, YANG JT, JU TJ, LI YY, KANG BW, TONG JX. An analysis of present status in plant water use efficiency research based on bibliometrics[J]. Journal of Northwest Forestry University, 2022, 37(6): 266-272(in Chinese).
    [12] 付全升, 黄先寒, 申仕康, 邓涛, 孙航. 基于数据库的植物功能性状研究现状文献计量学分析[J]. 应用与环境生物学报, 2021, 27(1): 228-240. FU QS, HUANG XH, SHEN SK, DENG T, SUN H. Bibliometric analysis of the status quo of plant functional traits research based on databases across the Web of Science[J]. Chinese Journal of Applied and Environmental Biology, 2021, 27(1): 228-240(in Chinese).
    [13] 王佳琳, NALISA DL, 李映, 姜宏卫. 2001-2022年青蒿琥酯的文献计量学分析[J]. 世界科学技术-中医药现代化, 2023. https://link.cnki.net/urlid/11.5699.R. 20231023.0916.002. Wang JL, NALISA DL, LI Y, Jiang HW. Worldwide research trends on artesunate: a bibliometric analysis from 2001 to 2022[J]. Modernization of Traditional Chinese Medicine and Materia Medica-World Science and Technology, 2023. https://link.cnki.net/urlid/11.5699.R.20231023.0916.002(in Chinese).
    [14] CHEN CM, CHEN Y, HOU JH, LIANG YX. CiteSpace II: detecting and visualizing emerging trends and transient patterns in scientific literature[J]. Journal of the American Society for Information Science and Technology, 2006, 57(3): 359-377.
    [15] 吴健, 王敏, 靳志辉, 吴建强, 沙晨燕, 齐晓宝, 唐浩, 黄沈发. 土壤环境中多环芳烃研究的回顾与展望: 基于Web of Science大数据的文献计量分析[J]. 土壤学报, 2016, 53(5): 1085-1096. WU J, WANG M, JIN ZH, WU JQ, SHA CY, QI XB, TANG H, HUANG SF. Review and prospect of research on polycyclic aromatic hydrocarbons in soil environment: a bibliometric analysis based on megadata of Web of Science[J]. Acta Pedologica Sinica, 2016, 53(5): 1085-1096(in Chinese).
    [16] 罗斌圣, 龙春林. 民族生态学研究的文献计量学可视化分析[J]. 生态学报, 2018, 38(4): 1510-1519. LUO BS, LONG CL. Bibliometric visualization analysis of ethnic ecology research[J]. Acta Ecologica Sinica, 2018, 38(4): 1510-1519(in Chinese).
    [17] 陈芳, 张士靖. 基于知识图谱的我国医院图书馆研究热点和前沿分析[J]. 中华医学图书情报杂志, 2016, 25(8): 19-23. CHEN F, ZHANG SJ. Knowledge mapping-based analysis of hot spots and frontiers in studies on domestic hospital libraries[J]. Chinese Journal of Medical Library and Information Science, 2016, 25(8): 19-23(in Chinese).
    [18] 魏燕, 童丽梅, 王熙玮, 郭盛, 钱大玮, 段金廒, 张芳. 枸杞多糖类物质研究现状及发展动态的文献计量学分析[J]. 中草药, 2022, 53(24): 7843-7854. WEI Y, TONG LM, WANG XW, GUO S, QIAN DW, DUAN JA, ZHANG F. Bibliometric analysis of research status and development of polysaccharides in Lycii Fructus[J]. Chinese Traditional and Herbal Drugs, 2022, 53(24): 7843-7854(in Chinese).
    [19] 刘晓轩, 张驰, 黄思琪, 张伟龙, 陈思雅, 孔雨朦, 周敏, 张喜利, 刘文龙. 黄精多糖类物质研究现状及发展动态的文献计量学分析[J]. 中草药, 2023, 54(21): 7130-7141. LIU XX, ZHANG C, HUANG SQ, ZHANG WL, CHEN SY, KONG YM, ZHOU M, ZHANG XL, LIU WL. Bibliometric analysis of current status and development trend of polysaccharide from Polygonati rhizoma[J]. Chinese Traditional and Herbal Drugs, 2023, 54(21): 7130-7141(in Chinese).
    [20] 王艳秋, 孟翔鹤, 秦静波, 江泽强, 李竹青, 张潞潞, 赵蔚波, 李倩茹, 闫圣, 王济. 基于Citespace的中医药治疗过敏性紫癜可视化分析[J]. 中国实验方剂学杂志, 2020, 26(10): 173-179. WANG YQ, MENG XH, QIN JB, JIANG ZQ, LI ZQ, ZHANG LL, ZHAO WB, LI QR, YAN S, WANG J. Visualization analysis of henoch-schonlein purpura treated by traditional Chinese medicine based on Citespace[J]. Chinese Journal of Experimental Traditional Medical Formulae, 2020, 26(10): 173-179(in Chinese).
    [21] YADAV AN, KOUR D, KAUR T, DEVI R, YADAV A. Endophytic fungal communities and their biotechnological implications for agro-environmental sustainability[J]. Folia Microbiologica, 2022, 67(2): 203-232.
    [22] DONG CJ, WANG LL, LI Q, SHANG QM. Epiphytic and endophytic fungal communities of tomato plants[J]. Horticultural Plant Journal, 2021, 7(1): 38-48.
    [23] LI XY, WANG J, ZHANG SP, WANG HH, LI X, LI X, ZHANG HW. Distribution of fungal endophytes in roots of Stipa krylovii across six vegetation types in grassland of northern China[J]. Fungal Ecology, 2018, 31: 47-53.
    [24] HUANG WY, CAI YZ, HYDE KD, CORKE H, SUN M. Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants[J]. Fungal Diversity, 2008, 33: 61-75.
    [25] KHALMURATOVA I, KIM H, NAM YJ, OH Y, JEONG MJ, CHOI HR, YOU YH, CHOO YS, LEE IJ, SHIN JH, YOON H, KIM JG. Diversity and plant growth promoting capacity of endophytic fungi associated with halophytic plants from the west coast of Korea[J]. Mycobiology, 2015, 43(4): 373-383.
    [26] SHEN ZH, LIU XB, YANG J, WANG YL, YAO K, HUO QM, FU YP, WEI YH, GUO B. The temporal and spatial endophytic fungal community of Huperzia serrata: diversity and relevance to huperzine A production by the host[J]. BMC Microbiology, 2022, 22(1): 281.
    [27] SÁNCHEZ MÁRQUEZ S, BILLS GF, DOMÍNGUEZ ACUÑA L, ZABALGOGEAZCOA I. Endophytic mycobiota of leaves and roots of the grass Holcus lanatus[J]. Fungal Diversity, 2010, 41(1): 115-123.
    [28] RODRIGUES KF. The foliar fungal endophytes of the Amazonian palm Euterpe oleracea[J]. Mycologia, 1994, 86(3): 376.
    [29] LORO M, VALERO-JIMÉNEZ CA, NOZAWA S, MÁRQUEZ LM. Diversity and composition of fungal endophytes in semiarid Northwest Venezuela[J]. Journal of Arid Environments, 2012, 85: 46-55.
    [30] GIAUQUE H, HAWKES CV. Climate affects symbiotic fungal endophyte diversity and performance[J]. American Journal of Botany, 2013, 100(7): 1435-1444.
    [31] ZHANG T, YAO YF. Endophytic fungal communities associated with vascular plants in the high Arctic zone are highly diverse and host-plant specific[J]. PLoS One, 2015, 10(6): e0130051.
    [32] XIA Y, SAHIB MR, AMNA A, OPIYO SO, ZHAO ZZ, GAO YG. Culturable endophytic fungal communities associated with plants in organic and conventional farming systems and their effects on plant growth[J]. Scientific Reports, 2019, 9: 1669.
    [33] DONG X, JIANG FF, DUAN DD, TIAN Z, LIU HN, ZHANG YN, HOU FJ, NAN ZB, CHEN T. Contrasting effects of grazing in shaping the seasonal trajectory of foliar fungal endophyte communities on two semiarid grassland species[J]. Journal of Fungi, 2023, 9(10): 1016.
    [34] MOSADDEGHI MR, HOSSEINI F, HAJABBASI MA, SABZALIAN MR, SEPEHRI M. Epichloë spp. and Serendipita indica endophytic fungi: functions in plant-soil relations[J]. Advances in Agronomy, 2021, 165: 59-113.
    [35] YANG HJ, YE WW, MA JX, ZENG DD, RONG ZY, XU M, WANG YC, ZHENG XB. Endophytic fungal communities associated with field-grown soybean roots and seeds in the Huang-Huai region of China[J]. Peer J, 2018, 6: e4713.
    [36] ADELEKE BS, AYILARA MS, AKINOLA SA, BABALOLA OO. Biocontrol mechanisms of endophytic fungi[J]. Egyptian Journal of Biological Pest Control, 2022, 32(1): 46.
    [37] ALY AH, DEBBAB A, PROKSCH P. Fungal endophytes: unique plant inhabitants with great promises[J]. Applied Microbiology and Biotechnology, 2011, 90(6): 1829-1845.
    [38] YU P, HOCHHOLDINGER F. The role of host genetic signatures on root-microbe interactions in the rhizosphere and endosphere[J]. Frontiers in Plant Science, 2018, 9: 1896.
    [39] DANG HL, ZHANG T, WANG ZK, LI GF, ZHAO WQ, LV XH, ZHUANG L. Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants[J]. BMC Plant Biology, 2021, 21(1): 165.
    [40] CHAND K, SHAH S, SHARMA J, PAUDEL MR, PANT B. Isolation, characterization, and plant growth-promoting activities of endophytic fungi from a wild orchid Vanda cristata[J]. Plant Signaling & Behavior, 2020, 15(5): 1744294.
    [41] AKRAM S, AHMED A, HE PF, HE PB, LIU YL, WU YX, MUNIR S, HE YQ. Uniting the role of endophytic fungi against plant pathogens and their interaction[J]. Journal of Fungi, 2023, 9(1): 72.
    [42] YAMAJI K, WATANABE Y, MASUYA H, SHIGETO A, YUI H, HARUMA T. Root fungal endophytes enhance heavy-metal stress tolerance of Clethra barbinervis growing naturally at mining sites via growth enhancement, promotion of nutrient uptake and decrease of heavy-metal concentration[J]. PLoS One, 2016, 11(12): e0169089.
    [43] GASONI L, de GURFINKEL BS. The endophyte Cladorrhinum foecundissimum in cotton roots: phosphorus uptake and host growth[J]. Mycological Research, 1997, 101(7): 867-870.
    [44] XIE XG, ZHANG FM, YANG T, CHEN Y, LI XG, DAI CC. Endophytic fungus drives nodulation and N2 fixation attributable to specific root exudates[J]. mBio, 2019, 10(4): e00728-19.
    [45] ADELEKE BS, BABALOLA OO. Biotechnological overview of agriculturally important endophytic fungi[J]. Horticulture, Environment, and Biotechnology, 2021, 62(4): 507-520.
    [46] MUKHERJEE A, BHOWMICK S, YADAV S, RASHID MM, CHOUHAN GK, VAISHYA JK, VERMA JP. Re-vitalizing of endophytic microbes for soil health management and plant protection[J]. 3 Biotech, 2021, 11(9): 399.
    [47] WANG Y, CHENG HY, CHANG F, ZHAO L, WANG B, WAN Y, YUE M. Endosphere microbiome and metabolic differences between the spots and green parts of Tricyrtis macropoda leaves[J]. Frontiers in Microbiology, 2021, 11: 599829.
    [48] RAJAMANIKYAM M, VADLAPUDI V, AMANCHY R, UPADHYAYULA SM. Endophytic fungi as novel resources of natural therapeutics[J]. Brazilian Archives of Biology and Technology, 2017, 60: e17160542.
    [49] BEN SLAMA H, CHENARI BOUKET A, ALENEZI FN, POURHASSAN Z, GOLIŃSKA P, OSZAKO T, BELBAHRI L. Potentials of endophytic fungi in the biosynthesis of versatile secondary metabolites and enzymes[J]. Forests, 2021, 12(12): 1784.
    [50] DUAN XX, XU FF, QIN D, GAO TC, SHEN WY, ZUO SH, YU BH, XU JR, PENG YJ, DONG JY. Diversity and bioactivities of fungal endophytes from Distylium chinense, a rare waterlogging tolerant plant endemic to the Three Gorges Reservoir[J]. BMC Microbiology, 2019, 19(1): 278.
    [51] XING XK, GUO SX, FU JG. Biodiversity and distribution of endophytic fungi associated with Panax quinquefolium L. cultivated in a forest reserve[J]. Symbiosis, 2010, 51(2): 161-166.
    [52] FENG L, ZHANG AX, LI L, ZHANG XJ, WANG Z, TAN NH. Diversity of cultivable endophytic fungi in two Rubia plants and their potential for production of anti‐tumour Rubiaceae‐type cyclopeptides[J]. Letters in Applied Microbiology, 2021, 73(6): 759-769.
    [53] GUPTA S, CHATURVEDI P, KULKARNI MG, van STADEN J. A critical review on exploiting the pharmaceutical potential of plant endophytic fungi[J]. Biotechnology Advances, 2020, 39: 107462.
    [54] ALY AH, DEBBAB A, PROKSCH P. Fungal endophytes: secret producers of bioactive plant metabolites[J]. Die Pharmazie, 2013, 68(7): 499-505.
    [55] ADELEKE BS, BABALOLA OO. Pharmacological potential of fungal endophytes associated with medicinal plants: a review[J]. Journal of Fungi, 2021, 7(2): 147.
    [56] dos SANTOS Da ROCHA P, PAULA VMB, OLINTO SCF, dos SANTOS EL, de PICOLI SOUZA K, ESTEVINHO LM. Diversity, chemical constituents and biological activities of endophytic fungi isolated from Schinus terebinthifolius Raddi[J]. Microorganisms, 2020, 8(6): 859.
    [57] TARITLA S, KUMARI M, KAMAT S, BHAT SG, JAYABASKARAN C. Optimization of physicochemical parameters for production of cytotoxic secondary metabolites and apoptosis induction activities in the culture extract of a marine algal-derived endophytic fungus Aspergillus sp.[J]. Frontiers in Pharmacology, 2021, 12: 542891.
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郑涵蔡元,黄先寒,罗增远,代兴汛,刘鲁峰. 基于Web of Science核心合集数据库和CiteSpace中植物内生真菌多样性研究的文献计量学分析[J]. 微生物学通报, 2024, 51(9): 3690-3705

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  • 收稿日期:2023-12-01
  • 录用日期:2024-03-06
  • 在线发布日期: 2024-09-19
  • 出版日期: 2024-09-20
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