科微学术

微生物学通报

两种盐生植物内生真菌多样性及其功能预测
作者:
基金项目:

新疆维吾尔自治区上海合作组织科技伙伴计划(2020E01047)


Diversity and roles of endophytic fungi in two halophytes
Author:
  • 摘要
  • | |
  • 访问统计
  • |
  • 参考文献 [29]
  • |
  • 相似文献 [20]
  • |
  • 引证文献
  • | |
  • 文章评论
    摘要:

    【背景】植物内生菌是微生物群落中一类非常重要的组成部分,是重要的微生物资源库,在植物促生、抗逆等多个领域有重要的研究和应用价值。【目的】进一步了解干旱荒漠区盐生植物内生真菌的多样性、群落结构和潜在功能特征。【方法】对生长在乌兹别克斯坦西咸海岸边的两种盐生植物毛足假木贼(Anabasis eriopoda abbreviated as AE)和展枝假木贼(A. truncata abbreviated as AT)的内生真菌群落进行扩增子测序分析。【结果】共获得166个amplicon sequencing variants (ASVs),涉及4门49属,其中NeocamarosporiumBotryosphaeriaAlternaria及其所属高级分类单元是优势类群。多样性和群落组成分析显示两种盐生植物的内生真菌存在较为明显的差异,并包含一些潜在的新分类单元。基于PICRUSt2和FUNGuild的功能预测结果表明这两种盐生植物内生真菌的潜在功能和营养方式多样且表现出宿主差异性。【结论】盐生植物内生真菌具有较高的多样性和潜在的资源价值,有待进一步挖掘和研究。

    Abstract:

    [Background] Endophytes associated with halophytes have a wide range of activities, such as promoting plant growth, improving stress resistance, fixing nitrogen, and degrading toxic compounds. [Objective] To deeply understand the diversity, community structure, and potential roles of endophytic fungi of halophytes in the arid land. [Methods] Amplicon sequencing was performed for the endophytic fungi in two halophytes (Anabasis eriopoda and A. truncata) growing on the coast of the western Aral Sea in Uzbekistan. [Results] A total of 166 amplicon sequencing variants (ASVs) were obtained, representing 49 genera of 4 phyla, among which the dominant taxa were Neocamarosporium, Botryosphaeria, Alternaria and their higher taxa. The diversity and community composition of endophytic fungi showed significant differences between the two halophytes, which harbored potential novel taxa. Functional prediction by PICRUSt2 and FUNGuild demonstrated that the endophytic fungi in the two halophytes exhibited diverse roles and trophic modes, being host specific. [Conclusion] Our results suggest that the endophytic fungi in halophytes have high diversity and potential resource values and remain to be studied.

    参考文献
    [1] GLENN EP, BROWN JJ, BLUMWALD E. Salt tolerance and crop potential of halophytes[J]. Critical Reviews in Plant Sciences, 1999, 18(2):227-255.
    [2] ASADULLAH A, BANO A. Climate change modulates halophyte secondary metabolites to reshape rhizosphere halobacteria for biosaline agriculture[J]. Applied Sciences, 2023, 13(3):1299.
    [3] YIN ZP, ZHANG H, ZHAO Q, YOO MJ, ZHU N, YU JL, YU JJ, GUO SY, MIAO YC, CHEN SX, QIN Z, DAI SJ. Physiological and comparative proteomic analyses of saline-alkali NaHCO3-responses in leaves of halophyte Puccinellia tenuiflora[J]. Plant and Soil, 2019, 437(1):137-158.
    [4] XIA F, JIANG G, LU J. Development of the study on halophyte's structure of resisting saline-alkali[J]. Journal of Tonghua Normal University, 2002, 23(2):67-69.
    [5] GUPTA B, HUANG BR. Mechanism of salinity tolerance in plants:physiological, biochemical, and molecular characterization[J]. International Journal of Genomics, 2014, 2014:701596.
    [6] AFZAL I, SHINWARI ZK, SIKANDAR S, SHAHZAD S. Plant beneficial endophytic bacteria:mechanisms, diversity, host range and genetic determinants[J]. Microbiological Research, 2019, 221:36-49.
    [7] WANI ZA, ASHRAF N, MOHIUDDIN T, RIYAZ-UL-HASSAN S. Plant-endophyte symbiosis, an ecological perspective[J]. Applied Microbiology and Biotechnology, 2015, 99(7):2955-2965.
    [8] Patrick A, Anson M, OLGA P, MELANIE L. A high-resolution diatom-inferred palaeoconductivity and lake level record of the Aral Sea for the last 1600 yr[J]. Quaternary Research, 2007, 67(3):383-393.
    [9] Zhao CZ ZHANG H, SONG CP, ZHU JK, SHABALA S. Mechanisms of plant responses and adaptation to soil salinity[J]. The Innovation, 2020, 1(1):100017.
    [10] KUSHWAHA P, KASHYAP PL, BHARDWAJ AK, KUPPUSAMY P, SRIVASTAVA AK, TIWARI RK. Bacterial endophyte mediated plant tolerance to salinity:growth responses and mechanisms of action[J]. World Journal of Microbiology and Biotechnology, 2020, 36(2):26.
    [11] Jiang HC, HUANG JR, LI L, HUANG LQ, MANZOOR M, YANG J, WU G, SUN XX, WANG BC, EGAMBERDIEVA D, PANOSYAN H, BIRKELAND NK, ZHU ZH, LI WJ. Onshore soil microbes and endophytes respond differently to geochemical and mineralogical changes in the Aral Sea[J]. Science of the Total Environment, 2021, 765:142675.
    [12] RANA KL, KOUR D, KAUR T, DEVI R, YADAV AN, YADAV N, DHALIWAL HS, SAXENA AK. Endophytic microbes:biodiversity, plant growth-promoting mechanisms and potential applications for agricultural sustainability[J]. Antonie Van Leeuwenhoek, 2020, 113(8):1075-1107.
    [13] HARDOIM PR, van OVERBEEK LS, BERG G, PIRTTILÄ AM, COMPANT S, CAMPISANO A, DÖRING M, SESSITSCH A. The hidden world within plants:ecological and evolutionary considerations for defining functioning of microbial endophytes[J]. Microbiology and Molecular Biology Reviews:MMBR, 2015, 79(3):293-320.
    [14] Kuldau G, Bacon C. Clavicipitaceous endophytes:their ability to enhance resistance of grasses to multiple stresses[J]. Biological Control, 2008, 46(1):57-71.
    [15] TIAN XY, ZHANG CS. Illumina-based analysis of endophytic and rhizosphere bacterial diversity of the coastal halophyte Messerschmidia sibirica[J]. Frontiers in Microbiology, 2017, 8:2288.
    [16] 黄建蓉, 高磊, 李丽, 李文均, 蒋宏忱. 咸海湖泊退缩对岸边土壤真菌和植物内生真菌的影响研究[J]. 微生物学报, 2021, 61(6):1681-1697.HUANG JR, GAO L, LI L, LI WJ, JIANG HC. Influence of lake desiccation on the entophytic and soil fungal communities on the Aral Sea shore[J]. Acta Microbiologica Sinica, 2021, 61(6):1681-1697(in Chinese).
    [17] 钮旭光, 宋立超, 韩梅, 肖亦农. 盐生植物翅碱蓬的内生真菌多样性分析[J]. 微生物学通报, 2012, 39(10):1388-1395.NIU XG, SONG LC, HAN M, XIAO YN. Diversity of endophytic fungi of Suaeda heteroptera kitag[J]. Microbiology China, 2012, 39(10):1388-1395(in Chinese).
    [18] 刘晓静, 张志东, 唐琦勇, 顾美英, 张丽娟, 宋素琴, 朱静. 新疆和硕干旱荒漠区盐爪爪内生真菌群落特征分析[J]. 干旱区资源与环境, 2020, 34(6):159-165.LIU XJ, ZHANG ZD, TANG QY, GU MY, ZHANG LJ, SONG SQ, ZHU J. Diversity of endophytic fungi community in Kalidium caspicum from arid desert area in Heshuo County of Xinjiang[J]. Journal of Arid Land Resources and Environment, 2020, 34(6):159-165(in Chinese).
    [19] 唐琦勇, 朱静, 楚敏, 顾美英, 孙建, 艾尼江·吾斯满, 张志东. 北疆盐角草内生真菌群落组成和分布[J]. 干旱区资源与环境, 2021, 35(5):137-143.TANG QY, ZHU J, CHU M, GU MY, SUN J, AINIJIANG WUSIMAN, ZHANG ZD. Community composition and distribution of endophytic fungi in Salicornia europaea from the northern Xinjiang[J]. Journal of Arid Land Resources and Environment, 2021, 35(5):137-143(in Chinese).
    [20] WANG HF, ZHANG YG, CHEN JY, GUO JW, LI L, HOZZEIN WN, ZHANG YM, WADAAN MAM, LI WJ. Frigoribacterium endophyticum sp. nov., an endophytic actinobacterium isolated from the root of Anabasis elatior (C. A. Mey.) Schischk[J]. International Journal of Systematic and Evolutionary Microbiology, 2015, 65(Pt 4):1207-1212.
    [21] LIU YH, GUO JW, LI L, ASEM MD, ZHANG YG, MOHAMAD OA, SALAM N, LI WJ. Endophytic bacteria associated with endangered plant Ferula sinkiangensis K. M. Shen in an arid land:diversity and plant growth-promoting traits[J]. Journal of Arid Land, 2017, 9(3):432-445.
    [22] KECHIN A, BOYARSKIKH U, KEL A, FILIPENKO M. cutPrimers:a new tool for accurate cutting of primers from reads of targeted next generation sequencing[J]. Journal of Computational Biology, 2017, 24(11):1138-1143.
    [23] CALLAHAN BJ, McMURDIE PJ, ROSEN MJ, HAN AW, JOHNSON AJA, HOLMES SP. DADA2:High-resolution sample inference from Illumina amplicon data[J]. Nature Methods, 2016, 13(7):581-583.
    [24] BOKULICH NA, KAEHLER BD, RIDEOUT JR, DILLON M, BOLYEN E, KNIGHT R, HUTTLEY GA. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature- classifier plugin[J]. Microbiome, 2018, 6(1):90.
    [25] 张志东, 朱静, 唐琦勇, 顾美英, 楚敏. 不同扩增引物对高通量测序分析盐角草内生真菌多样性的影响[J]. 微生物学通报, 2020, 47(2):411-419.ZHANG ZD, ZHU J, TANG QY, GU MY, CHU M. Effects of different amplification primers on diversity analysis of endophytic fungi in Salicornia europaea by the high-throughput sequencing[J]. Microbiology China, 2020, 47(2):411-419(in Chinese).
    [26] 李海林, 马斌, 张晓黎, 张倩倩, 郭晓红, 范德朋, 龚骏. 滨海湿地植物芦苇可培养内生真菌的多样性[J]. 应用生态学报, 2016, 27(7):2066-2074.LI HL, MA B, ZHANG XL, ZHANG QQ, GUO XH, FAN DP, GONG J. Diversity of culturable endophytic fungi of common reed (Phragmites australis) in coastal wetland[J]. Chinese Journal of Applied Ecology, 2016, 27(7):2066-2074(in Chinese).
    [27] 丁小维. 盐蒿内生耐(嗜)盐真菌的分离及鉴定[J]. 陕西理工学院学报(自然科学版), 2014, 30(4):55-60.DING XW. Isolation and identification of endophytic halotolerant and halophilic fungi associated with Artemisia halodendron[J]. Journal of Shaanxi University of Technology (Natural Science Edition), 2014, 30(4):55-60(in Chinese).
    [28] LI JL, SUN X, ZHENG Y, LÜ PP, WANG YL, GUO LD. Diversity and community of culturable endophytic fungi from stems and roots of desert halophytes in northwest China[J]. MycoKeys, 2020, 62:75-95.
    [29] KHALMURATOVA I, KIM H, NAM YJ, OH Y, JEONG MJ, CHOI HR, YOU YH, CHOO YS, LEE IJ, SHIN JH, YOON H, KIM JG. Diversity and plant growth promoting capacity of endophytic fungi associated with halophytic plants from the west coast of Korea[J]. Mycobiology, 2015, 43(4):373-383.
    引证文献
    网友评论
    网友评论
    分享到微博
    发 布
引用本文

高磊,黄银,马金彪,蒋宏忱,李文均,李丽. 两种盐生植物内生真菌多样性及其功能预测[J]. 微生物学通报, 2023, 50(8): 3357-3371

复制
相关视频

分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2022-10-20
  • 录用日期:2023-04-05
  • 在线发布日期: 2023-08-08
  • 出版日期: 2023-08-20
文章二维码