科微学术

微生物学通报

Meta分析在细菌耐药性研究中的应用与展望
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上海市教育委员会科研创新计划(2017-01-07-00-10-E00056);国家博士后创新人才支持计划(BX20190194);国家自然科学基金(32001800)


Application and prospect of Meta-analysis in the study of bacterial resistance
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    摘要:

    随着抗生素的大量不规范使用,细菌耐药性不断增强,导致耐药及多重耐药细菌的出现,严重威胁着人类健康。运用统计学方法对耐药性相关研究进行汇总与多元分析,有助于更好地了解全球细菌耐药性的流行与分布,明晰细菌耐药性形成规律与机制的共性问题。Meta分析是一种将多个同类型研究进行综合分析的统计学方法,已广泛应用于细菌耐药性的研究。本文简要描述了Meta分析的起源及基本流程,并采用文献计量的方法对2000-2020年关于Meta分析在细菌耐药性研究中的应用进行系统综述;进一步总结并阐述了Meta分析在细菌耐药性领域应用的成功案例和结论,而且对Meta分析方法在细菌耐药性领域中的进一步研究进行了展望,以期推动该方法在细菌耐药性研究中的应用,为耐药性问题的系统阐释和有效控制提供可靠的工具。

    Abstract:

    With the massive and irregular use of antibiotics, the antibiotic resistance of bacteria continues to increase, leading to the emergence of drug-resistant and multi-drug resistant bacteria, which seriously threaten human health. Therefore, the application of statistical methods to summarize and multi-analyze the research on antibiotic resistance will help to better understand the prevalence and distribution of antibiotic resistance bacteria worldwide, clarify the common problems of the laws and mechanisms of the formation of drug resistance, and provide effective and scientific guidance for prevention and control the breeding and transmission of bacterial resistance. Meta-analysis is a statistical method that comprehensively analyzes multiple studies in the same research field. It has been widely used in the study of bacterial resistance. In this comprehensive review, briefly describes the origin and basic process of Meta-analysis. The bibliometrics was used to systematically and comprehensively analyze the application of Meta-analysis in the study of bacterial antibiotic resistance from 2000 to 2020. Then, we summarized and explained the successful cases and conclusions of Meta-analysis in the field of bacterial resistance. Furthermore, the future research about Meta-analysis in the field of bacterial antibiotic resistance was prospected, for the view of promote the application of this method in the study of bacterial resistance, and provide a reliable tool for the systematic interpretation and effective control of bacterial resistance.

    参考文献
    [1] Nicolaou KC, Rigol S. A brief history of antibiotics and select advances in their synthesis[J]. The Journal of Antibiotics, 2018, 71(2):153-184
    [2] Cassini A, Högberg LD, Plachouras D, Quattrocchi A, Hoxha A, Simonsen GS, Colomb-Cotinat M, Kretzschmar ME, Devleesschauwer B, Cecchini M, et al. Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015:a population-level modelling analysis[J]. The Lancet Infectious Diseases, 2019, 19(1):56-66
    [3] Rodríguez-González A, Zanin M, Menasalvas-Ruiz E. Public health and epidemiology informatics:can artificial intelligence help future global challenges? An overview of antimicrobial resistance and impact of climate change in disease epidemiology[J]. Yearbook of Medical Informatics, 2019, 28(1):224-231
    [4] National Action Plan to Contain Bacterial Resistance[J]. Adverse Drug Reactions Journal, 2016, 18(5):398-400(in Chinese)遏制细菌耐药国家行动计划(2016−2020年)[J]. 药物不良反应杂志, 2016, 18(5):398-400
    [5] Lou Y, Liu HQ, Zhang ZH, Pan YJ, Zhao Y. Mismatch between antimicrobial resistance phenotype and genotype of pathogenic Vibrio parahaemolyticus isolated from seafood[J]. Food Control, 2016, 59:207-211
    [6] Li H, Tang R, Lou Y, Cui ZL, Chen WJ, Hong Q, Zhang ZH, Malakar PK, Pan YJ, Zhao Y. A comprehensive epidemiological research for clinical Vibrio parahaemolyticus in Shanghai[J]. Frontiers in Microbiology, 2017, 8:1043
    [7] Li H, Zhang ZH, Tang R, Lou Y, Zhao L, Chen WJ, Hong Q, Pan YJ, Zhao Y. Comparison of antimicrobial resistance of pathogenic Vibrio parahaemolyticus in seafood and clinical samples[J]. Chinese Journal of Zoonoses, 2016, 32(11):1006-1012(in Chinese)李欢, 张昭寰, 汤荣, 娄阳, 赵莉, 陈雯静, 洪庆, 潘迎捷, 赵勇. 食品与临床分离的致病性副溶血性弧菌耐药性比较[J]. 中国人兽共患病学报, 2016, 32(11):1006-1012
    [8] Chen JY, Liu DY, Zhao Y, Shun XH. Research progress on the synergistic effects between plant active ingredients and antibiotics to reduce drug resistance of bacterial[J/OL]. Natural Product Research and Development, 2021. http://kns.cnki.net/kcms/detail/51.1335.Q.20210120.1407.004.html (in Chinese)陈金玉, 刘单阳, 赵勇, 孙晓红. 植物活性成分协同抗生素消减细菌耐药性的研究进展[J/OL]. 天然产物研究与开发2021. http://kns.cnki.net/kcms/detail/51.1335.Q.20210120.1407.004.html
    [9] Zhao Y, Li H, Zhang ZH, Liu HQ, Pan YJ. Progress in studying antimicrobial resistance of foodborne pathogenic bacteria[J]. Chinese Journal of Bioprocess Engineering, 2018, 16(2):1-10(in Chinese)赵勇, 李欢, 张昭寰, 刘海泉, 潘迎捷. 食源性致病菌耐药机制研究进展[J]. 生物加工过程, 2018, 16(2):1-10
    [10] Tong JR, Zhang ZH, Huang ZH, Liu HQ, Pan YJ, Zhao Y. Bioinformatics analysis for structure and function of localization of lipoprotein system transporters in Vibrio parahaemolyticus[J]. Acta Microbiologica Sinica, 2020, 60(10):2242-2252(in Chinese)童金蓉, 张昭寰, 黄振华, 刘海泉, 潘迎捷, 赵勇. 副溶血性弧菌脂蛋白定位系统转运蛋白结构与功能的生物信息学分析[J]. 微生物学报, 2020, 60(10):2242-2252
    [11] Savoldi A, Carrara E, Graham DY, Conti M, Tacconelli E. Prevalence of antibiotic resistance in Helicobacter pylori:a systematic review and meta-analysis in World Health Organization regions[J]. Gastroenterology, 2018, 155(5):1372-1382.e17
    [12] Barrantes K, Achí R. The importance of integrons for development and propagation of resistance in Shigella:the case of Latin America[J]. Brazilian Journal of Microbiology, 2016, 47(4):800-806
    [13] Salmani A, Mohsenzadeh M, Pirouzi A, Khaledi A. A comprehensive meta-analysis of antibiotic resistance pattern among biofilm production strains of Acinetobacter baumannii recovered from clinical specimens of patients[J]. Gene Reports, 2020, 19:100664
    [14] Gurevitch J, Koricheva J, Nakagawa S, Stewart G. Meta-analysis and the science of research synthesis[J]. Nature, 2018, 555(7695):175-182
    [15] Pearson K. Report on certain enteric fever inoculation statistics[J]. British Medical Journal, 1904, 2(2288):1243-1246
    [16] Fisher BA. The design of experiments[J]. Agronomy Journal, 1935, 27(12):1004-1005
    [17] Yates F, Cochran WG. The analysis of groups of experiments[J]. The Journal of Agricultural Science, 1938, 28(4):556-580
    [18] Cochran WG. The combination of estimates from different experiments[J]. Biometrics, 1954, 10(1):101
    [19] Pratt JG, Smith BM, Rhine JB, Stuart CE, Greenwood JA. Extra-sensory Perception after Sixty Years:A Critical Appraisal of the Research in Extra-Sensory Perception[M]. Henry Holt and Company, 1940
    [20] Light R, Smith P. Accumulating evidence:procedures for resolving contradictions among different research studies[J]. Harvard Educational Review, 1971, 41(4):429-471
    [21] Glass GV. Primary, secondary, and Meta-analysis of research[J]. Educational Researcher, 1976, 5(10):3-8
    [22] Schmid A, Wolfensberger A, Nemeth J, Schreiber PW, Sax H, Kuster SP. Monotherapy versus combination therapy for multidrug-resistant Gram-negative infections:systematic review and Meta-analysis[J]. Scientific Reports, 2019, 9(1):15290
    [23] Sulis G, Adam P, Nafade V, Gore G, Daniels B, Daftary A, Das J, Gandra S, Pai M. Antibiotic prescription practices in primary care in low- and middle-income countries:a systematic review and meta-analysis[J]. PLoS Medicine, 2020, 17(6):e1003139
    [24] Narayan P. Meta-analytical prevalence of foodborne pathogens and comparative pathogenomics of Salmonella Dublin[D]. Hangzhou:Doctoral Dissertation of Zhejiang University, 2019(in Chinese) Narayan Paudyal. 针对食源性病原菌流行性的Meta分析和都柏林沙门氏菌的比较基因组分析[D]. 杭州:浙江大学博士学位论文, 2019
    [25] Tian L, Wang L. A meta-analysis of microbial community structures and associated metabolic potential of municipal wastewater treatment plants in global scope[J]. Environmental Pollution, 2020, 263:114598
    [26] Moher D. Corrigendum to:preferred reporting items for systematic reviews and meta-analyses:the PRISMA statement[J]. International Journal of Surgery, 2010, 8(5):336-341
    [27] Pormohammad A, Mehdinejadiani K, Gholizadeh P, Nasiri MJ, Mohtavinejad N, Dadashi M, Karimaei S, Safari H, Azimi T. Global prevalence of colistin resistance in clinical isolates of Acinetobacter baumannii:a systematic review and meta-analysis[J]. Microbial Pathogenesis, 2020, 139:103887
    [28] Yeo YH, Shiu SI, Ho HJ, Zou BY, Lin JT, Wu MS, Liou JM, Wu CY. First-line Helicobacter pylori eradication therapies in countries with high and low clarithromycin resistance:asystematic review and network meta-analysis[J]. Gut, 2018, 67(1):20-27
    [29] Nathavitharana RR, Cudahy PGT, Schumacher SG, Steingart KR, Pai M, Denkinger CM. Accuracy of line probe assays for the diagnosis of pulmonary and multidrug-resistant tuberculosis:a systematic review and meta-analysis[J]. European Respiratory Journal, 2017, 49(1):1601075
    [30] George SM, Karanovic S, Harrison DA, Rani A, Birnie AJ, Bath-Hextall FJ, Ravenscroft JC, Williams HC. Interventions to reduce Staphylococcus aureus in the management of eczema[J]. Cochrane Database of Systematic Reviews, 2019, 2019(10):CD003871
    [31] Reverter M, Sarter S, Caruso D, Avarre JC, Combe M, Pepey E, Pouyaud L, Vega-Heredía S, De Verdal H, Gozlan RE. Aquaculture at the crossroads of global warming and antimicrobial resistance[J]. Nature Communications, 2020, 11(1):1870
    [32] Willems RPJ, Van Dijk K, Ket JCF, Vandenbroucke-Grauls CMJE. Evaluation of the association between gastric acid suppression and risk of intestinal colonization with multidrug-resistant microorganisms:a systematic review and meta-analysis[J]. JAMA Internal Medicine, 2020, 180(4):561-571
    [33] Zhang HY, Zhang Y, Chen CS. Common problems in meta-analysis applications[J]. Chinese Journal of Child Health Care, 2020, 28(1):113-116(in Chinese)张海悦, 张杨, 陈长生. Meta分析应用中常见的问题[J]. 中国儿童保健杂志, 2020, 28(1):113-116
    [34] Frater JL. Importance of reporting quality:an assessment of the COVID-19 meta-analysis laboratory hematology literature[J]. World Journal of Meta-Analysis, 2020, 8(4):309-319
    [35] Zeng XT, Huang W, Tian GX. Meta-analysis series 9:Meta-analysis quality assessment tools[J]. Chinese Journal of Evidence-Based Cardiovascular Medicine, 2013, 5(1):3-5(in Chinese)曾宪涛, 黄伟, 田国祥. Meta分析系列之九:Meta分析的质量评价工具[J]. 中国循证心血管医学杂志, 2013, 5(1):3-5
    [36] Pollock M, Fernandes RM, Hartling L. Evaluation of AMSTAR to assess the methodological quality of systematic reviews in overviews of reviews of healthcare interventions[J]. BMC Medical Research Methodology, 2017, 17(1):48
    [37] Natto ZS, AlGhamdi DS. Quality assessment of systematic reviews and meta-analyses published in Saudi journals from 1997 to 2017[J]. Saudi Medical Journal, 2019, 40(5):426-431
    [38] Blazevich AJ, Wilson CJ, Alcaraz PE, Rubio-Arias JA. Meta-analysis and Meta-regression[J]. Sports Medicine, 2020, 50(1):943-963
    [39] Lee YH. An overview of meta-analysis for clinicians[J]. The Korean Journal of Internal Medicine, 2018, 33(2):277-283
    [40] Serghiou S, Goodman SN. Random-effects meta-analysis:Summarizing evidence with caveats[J]. The Journal of the American Medical Association, 2019, 321(3):301-302
    [41] Begg CB, Mazumdar M. Operating characteristics of a rank correlation test for publication bias[J]. Biometrics, 1994, 50(4):1088-1101
    [42] Egger M, Davey Smith G, Schneider M, Minder C. Bias in meta-analysis detected by a simple, graphical test[J]. BMJ:British Medical Journal, 1997, 315(7109):629-634
    [43] Duval S, Tweedie R. Trim and fill:a simple funnel-plot-based method of testing and adjusting for publication bias in meta-analysis[J]. Biometrics, 2000, 56(2):455-463
    [44] Zhou XH, You AJ, Li YX, Fan ZP, Fan HM, Zheng L. Application and STATA implementation of regression model in Meta-analysis[J]. Journal of Tongji University:Medical Science, 2020, 41(2):255-258(in Chinese)周晓慧, 尤爱军, 李娅欣, 范竹萍, 范慧敏, 郑亮. 回归模型在Meta分析中的应用及Stata实现[J]. 同济大学学报(医学版), 2020, 41(2):255-258
    [45] Wang CY, Weng H, Jin YH, Li BH, Ren XQ, Zeng XT. How to perform meta-analysis of single nucleotide polymorphism data by Review Manager 5.3 software[J]. Chinese Journal of Evidence-Based Medicine, 2018, 18(2):244-248(in Chinese)王朝阳, 翁鸿, 靳英辉, 李柄辉, 任学群, 曾宪涛. 如何采用RevMan 5.3软件实现单核苷酸多态性数据的Meta分析[J]. 中国循证医学杂志, 2018, 18(2):244-248
    [46] Zhou TJ, Zhou XQ, Wan SX, Luo YL. Meta-analysis methods and their applications in the field of healthcare[J]. Chongqing Medicine, 2016, 45(7):985-988(in Chinese)周天津, 周雪晴, 万素馨, 罗亚玲. Meta分析方法及其在医疗卫生领域中的应用[J]. 重庆医学, 2016, 45(7):985-988
    [47] Guo M, Li X. Meta-analysis:a new quantitative research approach in eco-environmental sciences[J]. Journal of Desert Research, 2009, 29(5):911-919(in Chinese)郭明, 李新. Meta分析及其在生态环境领域研究中的应用[J]. 中国沙漠, 2009, 29(5):911-919
    [48] Lu W, Liu ZF, Huang Y, Bu Y, Li X, Cheng QK. How do authors select keywords? A preliminary study of author keyword selection behavior[J]. Journal of Informetrics, 2020, 14(4):101066
    [49] Qiu LD, Zhu RS, Huang HN, Xu WX, Ren Y, Chen J, Chen LF, Zhou Q. Meta analysis of the resistance rate of Escherichia coli to ampicillin[J]. Journal of Mathematical Medicine, 2019, 32(4):549-551(in Chinese)邱立东, 朱荣生, 黄华泥, 徐五星, 任易, 陈军, 陈丽峰, 周菁. 大肠杆菌对氨苄青霉素耐药率的Meta分析[J]. 数理医药学杂志, 2019, 32(4):549-551
    [50] Wang YL, Yang R. A meta analysis of resistance of carbapenem resistant Acinetobacter baumannii[J]. World Latest Medicine Information, 2019, 19(12):35-36(in Chinese)王雅丽, 杨荣. 耐碳青霉烯鲍曼不动杆菌耐药性Meta分析[J]. 世界最新医学信息文摘, 2019, 19(12):35-36
    [51] Kilbas I, Ciftci IH. Antimicrobial resistance of Enterococcus isolates in Turkey:a meta-analysis of current studies[J]. Journal of Global Antimicrobial Resistance, 2018, 12:26-30
    [52] Khademi F, Sahebkar A. The prevalence of antibiotic-resistant Clostridium species in Iran:a meta-analysis[J]. Pathogens and Global Health, 2019, 113(2):58-66
    [53] Bryce A, Hay AD, Lane IF, Thornton HV, Wootton M, Costelloe C. Global prevalence of antibiotic resistance in paediatric urinary tract infections caused by Escherichia coli and association with routine use of antibiotics in primary care:systematic review and meta-analysis[J]. BMJ:British Medical Journal, 2016, 352:i939
    [54] Bulabula ANH, Dramowski A, Mehtar S. Transmission of multidrug-resistant Gram-negative bacteria from colonized mothers to their infants:a systematic review and meta-analysis[J]. Journal of Hospital Infection, 2020, 104(1):57-67
    [55] D'Agata EMC, Geffert SF, McTavish R, Wilson F, Cameron C. Acquisition of antimicrobial-resistant bacteria in the absence of antimicrobial exposure:a systematic review and meta-analysis[J]. Infection Control and Hospital Epidemiology, 2019, 40(10):1128-1134
    [56] Agyeman AA, Bergen PJ, Rao GG, Nation RL, Landersdorfer CB. A systematic review and meta-analysis of treatment outcomes following antibiotic therapy among patients with carbapenem-resistant Klebsiella pneumoniae infections[J]. International Journal of Antimicrobial Agents, 2020, 55(1):105833
    [57] Yin H, Ruan J, Kou GX. Meta-analysis on moxifloxacin combined with capreomycin in treatment of patients with multi-drug resistant pulmonary tuberculosis[J]. Chinese Journal of Modern Applied Pharmacy, 2020, 37(19):2397-2402(in Chinese)尹恒, 阮军, 寇国先. 莫西沙星联合卷曲霉素治疗耐多药肺结核的meta分析[J]. 中国现代应用药学, 2020, 37(19):2397-2402
    [58] Jin X, Xie HB, Zeng H, Liu YK, Zhang T, Cao SP, Yin K. Combined traditional Chinese and western medicine treatment for multidrug-resistant pulmonary tuberculosis:a meta-analysis of randomized controlled trials[J]. Guiding Journal of Traditional Chinese Medicine and Pharmacy, 2018, 24(1):84-88,95(in Chinese)金昕, 谢和宾, 曾鸿, 刘艳科, 张婷, 曹仕鹏, 尹柯. 中西医结合治疗耐多药肺结核随机对照试验的Meta分析[J]. 中医药导报, 2018, 24(1):84-88,95
    [59] MacKinnon MC, Sargeant JM, Pearl DL, Reid-Smith RJ, Carson CA, Parmley EJ, McEwen SA. Evaluation of the health and healthcare system burden due to antimicrobial-resistant Escherichia coli infections in humans:a systematic review and meta-analysis[J]. Antimicrobial Resistance & Infection Control, 2020, 9(1):1-22
    [60] Nellums LB, Thompson H, Holmes A, Castro-Sánchez E, Otter JA, Norredam M, Friedland JS, Hargreaves S. Antimicrobial resistance among migrants in Europe:a systematic review and meta-analysis[J]. The Lancet Infectious Diseases, 2018, 18(7):796-811
    [61] Baur D, Gladstone BP, Burkert F, Carrara E, Foschi F, Döbele S, Tacconelli E. Effect of antibiotic stewardship on the incidence of infection and colonisation with antibiotic-resistant bacteria and Clostridium difficile infection:a systematic review and meta-analysis[J]. The Lancet Infectious Diseases, 2017, 17(9):990-1001
    [62] Ioannidis JPA. The mass production of redundant, misleading, and conflicted systematic reviews and meta-analyses[J]. The Milbank Quarterly, 2016, 94(3):485-514
    [63] Karygianni L, Ren Z, Koo H, Thurnheer T. Biofilm matrixome:extracellular components in structured microbial communities[J]. Trends in Microbiology, 2020, 28(8):668-681
    [64] Guo DF, Zhang ZH, Xiao LL, Lou Y, Pan YJ, Zhao Y. Comparison of growth characteristic of different antibiotic resistant pathogenic Vibrio parahaemolyticus[J]. Science and Technology of Food Industry, 2014, 35(19):137-141(in Chinese)郭丹凤, 张昭寰, 肖莉莉, 娄阳, 潘迎捷, 赵勇. 不同耐药性致病性副溶血性弧菌的生长特性比较研究[J]. 食品工业科技, 2014, 35(19):137-141
    [65] Lou Y, Zhang ZH, Xiao LL, Guo DF, Liu HQ, Pan YJ, Zhao Y. Growth kinetic parameters of multi-drug and single-drug resistant Vibrio parahaemolyticus strains in pure culture and in Penaeus vannamei[J]. Modern Food Science and Technology, 2015, 31(5):181-186(in Chinese)娄阳, 张昭寰, 肖莉莉, 郭丹凤, 刘海泉, 潘迎捷, 赵勇. 多重与单一耐药的副溶血性弧菌在纯培养及南美白对虾中生长动力学的参数比较研究[J]. 现代食品科技, 2015, 31(5):181-186
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陶倩,张昭寰,刘静,吴倩,黄振华,潘迎捷,赵勇. Meta分析在细菌耐药性研究中的应用与展望[J]. 微生物学通报, 2021, 48(11): 4364-4376

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  • 收稿日期:2021-02-07
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