Abstract:[Background] Fertilization is the better strategy to improve crop yield. Fertilization measures can affect soil fertility and microbial community structure. [Objective] The inter-relationship between physicochemical properties and soil culturable bacterial communities will be explored. An optimal fertilization plan will be selected, and the result will provide the basic data for future work. [Methods] Three fertilization treatments of no fertilization, conventional fertilization, conventional fertilization and green manure were carried out on karst paddy soil. Based on the study of soil physical and chemical properties, abundance and diversity of cultivable bacterial communities, the effect of different fertilization measures on karst paddy soil was discussed about influence bacterial community. [Results] Compared with no fertilization treatment, the soil pH value and organic carbon content decreased along conventional fertilization treatment. Combined with a large number of research results, it proved that the long-term excessive application of inorganic fertilizer or nitrogen fertilizer decreased the soil pH value. The accumulation of organic carbon appeared in conventional fertilization plus green manure. A total of 164 strains of bacteria were obtained by separation and purification, which were from Actinobacteria, Bacteroidetes, Firmicutes and Proteobacteria. At the genus level, the abundance of conventional fertilization combined with green manure was higher than that of the conventional fertilization group of dominant bacteria of Sphingomonas and Lysobacter. The diversity of bacterial communities has increased with the emergence of specific functional bacterial genera such as Paenibacillus, Streptomyces and Pseudomonas. The dominant bacteria Sphingopyxis, Lysobacter, Paenibacillus, Bosea, Streptomyces, Pseudomonas and Bacillus were significantly positively correlated with TN, and they were enriched in soil treated with conventional fertilization and green manure. [Conclusion] Under the treatment of conventional fertilization and green manure, the abundance of functional bacteria relating to nitrogen fixation and phosphorus increased which could increase soil fertility and have an important role in increasing crop production. The effect of conventional fertilization combined with green manure treatment on karst paddy soil is better than those with no fertilizer and conventional fertilization treatment.