Abstract:[Background] Denitrifying anaerobic methane oxidation (DAMO) is an anaerobic oxidation process, in which nitrate/nitrite works as the electron acceptor, while methane works as the electron donor. DAMO has great significance to understand the global carbon and nitrogen cycle, reduce greenhouse gas emissions and develop new technologies for nitrogen removal from wastewater. [Objective] Feeding nitrate or nitrite as the electron acceptor, we investigated the differences on the performance of the denitrifying anaerobic methane oxidation reactors. [Methods] The SBR reactors in which nitrate/nitrite works as the electron acceptor were inoculated sludge mixture and then consecutively long-term incubation for 800 days, meanwhile we measured the nitrite and nitrate concentration in the reactors and calculated the conversion rate regularly. The abundance and diversity of functional microorganisms were investigated by 16S rRNA gene phylogenetic analysis. Then we analyzed the amount of the functional microorganisms by real-time fluorescence quantitative PCR technique. [Results] The DAMO bacteria were detected in the No. 1 reactor and No. 3 reactor which were fed with nitrite as the electron acceptor but the DAMO archaea was not detected. However in the No. 2 reactor which was fed with nitrite as the electron acceptor, the DAMO archaea and bacteria were detected simultaneously. The nitrogen removal rate of the three reactors kept a low value at the very beginning, then experienced a fast lifting phase and maintained a steady value at last. The time when nitrogen removal rate of No. 2 reactor started to increase rapidly was about 80 days later than No. 1 and No. 3 reactor. Its stable maximum rate is only 44.7% of No. 1 reactor and 40.3% of No. 3 reactor, spending more time reaching the stability. [Conclusion] The different substrate fed leads to the different results of enrichment. The DAMO archaea and bacterial synergistic system, which is enriched with nitrate as the electron acceptor, can coexist for a long time. DAMO archaea may be a limiting factor in the nitrogen removal rate in the synergistic system.