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应用PCR-DGGE和Real-Time PCR分析健康与腹泻獭兔盲肠菌群
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四川省“十二五”农作物及畜禽育种攻关项目“皮兔新品种选育及配套技术研究”(No. 2011NZ0099-4)


Application of PCR-DGGE and Real-Time PCR to analyze the cecum microflora of health and diarrhea rex rabbit
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    摘要:

    【目的】研究獭兔腹泻发生后盲肠菌群结构的变化情况,为微生态防治断奶兔腹泻提供理论基础。【方法】分别提取5只健康和腹泻獭兔盲肠内容物总DNA,应用PCR-DGGE及Real-Time PCR技术比较分析獭兔盲肠中菌群结构的差异。【结果】腹泻獭兔PCR-DGGE图谱条带丰富度、均匀度、多样性指数与健康獭兔相比差异均不显著,但聚类分析和主成分分析(PCA)能够将腹泻组和健康组区分开。Real-Time PCR检测显示,腹泻獭兔盲肠正常菌群普雷沃氏菌、梭菌类群Ⅰ数量与健康獭兔相比没有变化(P>0.05);链球菌属、梭菌类群Ⅳ和ⅩⅣa、白色瘤胃球菌、溶纤维丁酸弧菌、普拉梭杆菌等有益微生物数量显著降低(P<0.01),而埃希氏大肠杆菌数量却显著升高(P<0.05)。【结论】獭兔腹泻发生后盲肠有益微生物数量降低,有害微生物数量升高;菌群结构有差异但不显著(P>0.05),腹泻獭兔盲肠菌群结构有复杂化的趋势。

    Abstract:

    [Objective] To provide theoretical basis for using probiotics to prevent and treat the diarrhea weaning rabbit, the experiments were performed to explore the structural changes of cecum microflora in the diarrhea rex rabbit. [Methods] Total DNA were extracted from the cecum contents of 5 healthy and 5 diarrhea rex rabbits respectively. PCR-DGGE and Real-Time PCR were applied to analyze the differences of Cecum microflora between the healthy and diarrhea rex rabbits. [Results] Through the analysis we found that the richness, evenness and diversity index of PCR-DGGE profiles bands were not significant difference. But clustering analysis and Principal Component Analysis (PCA) could distinguish diarrhea group from healthy group. Real-Time PCR detection showed that in the diarrhea rabbit, despite the number of the population of normal intestinal flora including Prevotella, Clostridium clusterⅠ was not changed (P>0.05), the population of Streptococcus spp., Clostridium leptum group, Bi?dobacterium spp., Clostridium coccoides, Ruminococcus albus, Butyrivibrio fibrisolvens, Fusobacterium rausnitzii were sharply decreased (P<0.01). However, the number of Escherichia coli, which belongs to the Enterobacteriacae family, was greatly increased (P<0.05). [Conclusion] The results prove that the population of probiotics decreased, some harmful microorganism quantity increased in the cecum of diarrhea rex rabbit, the cecum flora structure is difference but not significant (P>0.05), indeed the structure of flora has a tendency to complicate in the diarrhea rabbit.

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周毅,文斌,孙豪,段玲,傅祥超,曾东,倪学勤,汪平. 应用PCR-DGGE和Real-Time PCR分析健康与腹泻獭兔盲肠菌群[J]. 微生物学通报, 2016, 43(1): 131-139

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  • 在线发布日期: 2016-01-11
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