基因芯片技术在环境微生物群落研究中的应用

Microarray Application in Environmental Microbial Community Research

摘要:

基因芯片技术作为一种快速、敏感、高通量的检测技术, 近几年来在环境微生物群落研究中的应用越来越广泛并且得到充分的发展。它不仅可以研究环境微生物群落的微生物分布、种类、功能、动力学变化, 还能分析环境污染等环境因素改变对其微生物生态的影响。本文按照基因芯片探针的设计方法, 将环境样品群落研究基因芯片分为系统寡核苷酸芯片、功能基因芯片、群落基因组芯片、宏基因组芯片, 并简要综述了该技术在活性污泥、土壤、水等环境样品微生物群落研究上的应用, 最后, 本文展望了该技术的研究方向和在寻找不同环境微生物群落之间差异微生物、差异基因或差异表达基因研究中的应用前景。

Abstract:

Microarray technology, used in microorganisms detection with its advantages of rapid detection, high sensitivity, high-throughput and low cost, has been applied in environmental microbial community research widely in past few years. It focuses on investigation of structure, diversity, function, dynamics of microbial populations within complex environmental samples. Furthermore, it also reveals their responses and adaptation to environmental perturbations such as climate change, toxic contaminants. According probe design patterns, several types of microarrays, such as phylogenetic oligonucleotide arrays (POAs), functional gene arrays (FGAs), metagenomic array(MGA) and community genome arrays (CGAs) have been constructed for environmental studies. This review discusses applications of microarrays to environmental microbial populations research along with its potential for screening of specific microorganisms, gene or expression functional gene representing different environmental microbial populations.