Abstract:[Background] Extensive studies have been carried out on strain mutagenesis, especially chemical mutagenesis, in strain breeding. However, most of these studies employ conventional mutagenesis, which usually does not involve any special treatment of target cells and has low mutagenic efficiency due to random and uncontrollable mutagenic process. [Objective] To screen thermotolerant strains for simultaneous sulfide and nitrate removal, we improved the mutagenic scheme on the target strain and studied the entry of mutagen into the cells. [Methods] Both conventional mutagenesis and improved mutagenesis were carried out for Thiobacillus denitrificans. In the improved mutagenesis, piperazine-1,4-diethylsulfonic acid (PESA) was used to treat the exponential-phase cells into a susceptible state before mutagenesis to change the permeability of cytoplasmic membrane, and then different volumes (0.5‰–3.0‰) of the mutagen diethyl sulfate (DES) were separately added into the cell suspension for mutagenesis at a set temperature of 45 ℃ for 20 min. The thermotolerance and sulfide and nitrate removal performance were tested at 47 ℃ to obtain the thermotolerant mutants. During the process of strain mutagenesis, we used S2O32−, which could terminate DES mutagenesis, to observe the distribution of mutagen inside and outside the cells and compared the experimental results under different mutagenic schemes. [Results] We obtained the thermotolerant mutants capable of simultaneously removing sulfide and nitrate. The comparison of the two mutagenic schemes proved that changing the permeability of cytoplasmic membrane promoted the entry of mutagen into the cells. To achieve the same mutagenic effect, the improved mutagenesis only needed 1/10–1/9 of mutagen required by conventional mutagenesis. The percentage of mutagen entering the cells was 41.8%–40.4% of the total DES added in the improved mutagenesis and only 5.6%–4.4% in the conventional mutagenesis. The forward mutation efficiency might be closely related to the dosage of mutagen entering the cells, and the dosage in the improved mutagenesis was more suitable for achieving higher forward mutation efficiency. However, the dosage of mutagen did not determine under which circumstance or when individual mutation, such as thermotolerance or higher sulfide removal efficiency of mutants, probably occurred. The maximum dosage of mutagen entering cells depended on cell’s loading capacity and was independent of mutagenic schemes. The product analysis showed that S2O32− could be used to terminate the mutagenesis triggered by DES. [Conclusion] After treating the cells into a susceptible state, mutagenesis was carried out. And then through temperature-rise screening, 7 thermotolerant mutants with high-performance for sulfide and nitrate removal were obtained, providing new ideas for research on strain mutagenesis.