Abstract:[Background] The transcription factor ACE1 is widely present in cellulase- producing filamentous fungi, while its regulatory function in Aspergillus niger remains unclear. [Objective] To investigate the regulatory effects of ACE1 on β-glucosidase (BGL) expression, mycelial development, and pigment biosynthesis by deleting and overexpressing ACE1 in A. niger. [Methods] The knockout strain Δace1 and overexpression strain Oace1 were constructed with the parent strain An-1 through CRISPR-Cas9 gene editing. The BGL activity, mycelial growth, sporulation, and yellow pigment were determined under various induction conditions. [Results] The phylogenetic analysis revealed low homology of ace1 between A. niger and Trichoderma reesei or Neurospora crassa. The mutant Δace1 was successfully constructed after introduction of the CRISPR-Cas9 plasmid and the donor fragment. When microcrystalline cellulose (MCC) and corncob powder were used as inducers, the BGL activity of Δace1 with cellobiose as the substrate decreased by 86.1% and 54.9%, and that of Δace1 with p-nitrophenyl-α-D-glucopyranoside (pNPG) as the substrate decreased by 23.7% and 63.98%, respectively. The overexpression cassette Pgpd-ace1-Tgla was precisely integrated into the kusA locus to construct Oace1. The BGL activity of Oace1 was 1.37-2.16 times that of the wild strain An-1 with MCC as the inducer. On the medium with stevioside or MCC as the carbon source, Δace1 showed delayed hyphal extension and conidiophore differentiation, while Oace1 retained normal morphology. The yellow pigment biosynthesis ability of Δace1 was significantly enhanced in the solid and liquid media containing stevioside. [Conclusion] The transcription factor ACE1 positively regulates BGL expression and sporulation, while it negatively regulates yellow pigment synthesis in A. niger. Strengthening the expression of ACE1 effectively improves BGL production. This study provides a new strategy for optimizing the enzyme production performance of A. niger.