Abstract:[Background] Biodenitrification of wastewater containing heavy metals under low temperature conditions is facing severe challenges. Copper ions (Cu2+) can significantly affect the denitrification efficiency of microorganisms. At present, the research remains limited regarding the denitrification characteristics and tolerance mechanism of psychrotolerant denitrifiers under Cu2+ stress. [Objective] To investigate the denitrification characteristics and Cu2+ tolerance of Comamonas aquatilis NY3, providing theoretical guidance for the biological treatment of low temperature wastewater containing Cu2+. [Methods] We conducted batch experiments to study the effects of different concentrations of Cu2+ on the nitrogen removal efficiency of strain NY3. The activities of the electron transfer system and the key enzymes in nitrogen metabolism during the transformation of inorganic nitrogen by strain NY3 were studied under high-concentration Cu2+. In addition, we determined whether exogenous sulphide addition helped to alleviate the inhibition on the growth and metabolism of this strain by Cu2+. [Results] Cu2+ significantly affected the nitrogen removal ability of strain NY3. When Cu2+ was not added, the removal rates of ammonium nitrogen, nitrate nitrogen, and nitrite nitrogen by strain NY3 were 99.98%, 100.00%, and 100.00%, respectively. After the addition of 8.0 mg/L Cu2+, the removal rates decreased to 51.56%, 55.70%, and 0, respectively. At the same time, the activity of the electron transfer system also decreased from 0.306, 0.115, and 0.124 μg/(g·min) to 0. The activities of ammonia monooxygenase and nitrate reductase decreased from 0.260 U/mg and 0.610 U/mg to 0.250 U/mg and 0.260 U/mg, respectively. The addition of 45.0 mg/L NaHS and 50.0 mg/L Na2S significantly alleviated the inhibition of Cu2+ stress on the growth and metabolism of strain NY3. Specifically, 145 mg/L NaHS increased the removal rates of ammonium nitrogen and nitrate nitrogen by 48.17% and 70.94%, respectively. [Conclusion] Strain NY3 has certain tolerance to Cu2+ stress. Excessive Cu2+ has inhibitory effects on heterotrophic nitrification and aerobic denitrification of strain NY3. The inhibition of strain NY3 by Cu2+ can be alleviated by the addition of appropriate amounts of exogenous sulphur, which thereby increases the denitrification efficiency under Cu2+ stress. The findings provide a theoretical basis for the treatment of nitrogen-contaminated wastewater containing Cu2+ by microorganisms in a low-temperature environment.